Xiphias gladius (swordfish): 120790518
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Entry
120790518 CDS
T07311
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03013
Nucleocytoplasmic transport
xgl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120790518
03015 mRNA surveillance pathway
120790518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120790518
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120790518
5.6.2.5 RNA 5'-3' helicase
120790518
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120790518
mRNA cycle factors
Common to processing body (P body) and stress granule
120790518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
120790518
NCBI-ProteinID:
XP_039984033
LinkDB
All DBs
Position
LG6:complement(10517509..10534164)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDTQING
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGASQGNGP
NSQASQDGPSQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagttcccagaccctcaccttcttggacaccgaggaa
gcggagttgctcggagcggatacccagggctccgagtatgatttcaccgatttcaccctg
cccagccagacgcaaactcaaggccagacccagagccaactggacacccagataaatggt
cctgatgagggtcttcacaacggtggagtagatgactctgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggatgaagaagacacatattacaccaaagacctgcct
gtgcacgcatgcagctactgtggtatccacgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaacacatccggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaagtgacgctgcataaagatgggccactgggcgagacg
gtgctcgagtgttacaactgcggctgtcgcaacgtcttcctcctgggcttcatcccggcc
aaggccgattctgtggtggtgttactctgcaggcagccatgtgccagccagagtagctta
aaagacatcaactgggacagctctcagtggcaaccactgatccaggatcgctgctttttg
tcctggctggtgaagatcccatcagagcaggagcagcttcgagcccgtcagatcactgcc
cagcagatcaacaagctggaggagctctggaaggacaatcccaccgccaccttggaagac
ctggagaaacctggagtggatgaggaaccccagcatgtgctgctgcgctacgaggacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgaaatctgcctgcggtacaagggagacatggccccactgtggaaaggcattggc
catgtcatcaaagtccctgacaactatggggatgaaattgccatcgagttgcggagcagc
gttggagcacctgtggaaatcccccacaacttccaggtggactttgtgtggaaatccact
tcctttgacaggatgcaaagcgccctgaaaacgtttgcggtggacgagacctccgtgtct
ggctacatttaccacaaactgcttggacatgaggtggaggatgtcaccatcaagtgccag
ctgccgaagcgcttcactgctcagggcctgcctgacctcaatcactcacaggtgtacgct
gtgaagacagtgctacagaggcctctcagtctgattcagggtcctcccggcactgggaag
actgtcacctctgcaactatcgtttatcacctgtcccgacagggcaacggcccagttctg
gtgtgtgctcccagtaacattgctgtggaccagttaactgagaagattgacaagactggg
ctgaaggttgttaggctgtgtgccaagagtcgggaggccattgagtcaccagtgtctttt
ctggctctgcacaatcagatcagcaacatggacagtatgccagagcttcagaaactacag
cagctaaaggatgagactggtgagctgtcatctgcggatgagaaacgctacagggctttg
aaacgcactgctgagagggagctgctcatgaatgccgatgtgatctgctgcacctgtgtc
ggggctggagacccccgcctagccaagatgcagttccgctccatcttgattgacgaaagc
acccaggccaccgagccagagtgtatggtccctgtggtgttgggagccaagcagctcatt
ttggtgggtgaccactgccagttgggtcctgtggtaatgtgtaagaaggcggccaaggca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggatccggccaatccgcctg
caggtccagtaccgcatgcatccggctctcagtgccttcccctccaacatcttctatgag
ggctccctgcaaaatggtgtcactgcagctgaccgcattaagaaaggctttgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggccaggaggagattgcc
agctctggaacctcctacctcaacaggacggaggctgccaacgtagagaagatcaccacc
aggctgctgaaggctggagcaaaacccgaccaaatcggcatcatcaccccatacgagggt
cagcgctcttacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagtgtggacgccttccagggaagagagaaggacttcatcatc
ctttcttgtgttcgtgccaatgagcatcagggcatcggcttcctgaatgaccctcgccgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcatcgtggggaaccccaaggcc
ctctccaagcaaccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctg
gttgaggggcccctcaacaacctgagggagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctggtggacgttttatgagcactgcgatgtacgatgcccgt
gaggccctcatccctggctctgcatatgaccgcagcaatgctgccgggcgtccgtccaac
atgtactttcaaactcatgaccagattgggatgattggggcaggccccggtcatatggct
gctatgaatatccccatacccttcaacctggtgatgccgccaatgcctccacccagctac
ctgggtcagaccaacggccctgctgcaggtcgtggagctatgaagggcaagcctgggcgt
ggcgggcggcagagggtccgtggttctggaaaccagggtgccagtcagggtaacggaccg
aacagccaggccagccaggatggaccctcccagtccttctcccaggggccgctgacacag
ggctacatctccatgagccagccctctcagatgagccagcctggcctctcccagccagag
ctctcccaggacagctacctgggcgatgagttcaagtcgcaaatcgatgtggctttgtcc
caggactcaacttaccagggtgaacgtgcataccagcatggcggcgtgactggactgtca
cagtactaa
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