Xiphias gladius (swordfish): 120790539
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Entry
120790539 CDS
T07311
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120790539 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
xgl04091
]
120790539 (frem1b)
Lectins [BR:
xgl04091
]
C-Type lectins
Lecticans
120790539 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Calx-beta
Motif
Other DBs
NCBI-GeneID:
120790539
NCBI-ProteinID:
XP_039984103
LinkDB
All DBs
Position
LG6:1545121..1596108
Genome browser
AA seq
2154 aa
AA seq
DB search
MAVVSMLLLLALTAVSNGSLVVVNLGVEVARGRSVFITEKELRISVDPTADCKVEVVMNE
PVTQRVGRLTPQVFDCSFLEDEVKYVHNGSPLLDEDTVSLRVYRFTSSDTLVETVALLVR
VVDSGSGVVELGSAPLVVPQFFGLSNAIDSSVLRIRTTADLVCTIRLMTTDTNVPALGQL
VREEDSTQRKGRETAALCPGNKPCLHDTKEVRFLKTSCQDFLSSGLKYQHLSPPSPEIDY
IPIRVELREQTTRAQLETEAVWLPVLIHGAMQNQPPKGAFMASFILEVDQFILTPLTTAA
LDAKDQETPQERLVFNVTVPPAEGYITHLDDHTKPIRSFTWLDLHEMKVAYQPPNSSQSH
RRNYEVEFQAIDGSYMTSPPITVHISIRAAETNAPRVSWNMGLDLLEGQSRPITWEELQI
VDSDNIDAVYLVAVDGPLHGRLSVRGGKAFMFRVRDLREGVVVYHHSDSDTTRDHVVFRI
SDGRHSIRHKFPINILPKDDSPPFLINNVAVEVQEGGSVRLEEYVLSASDLDSSDDYILY
QMVSSPRAGQLVRKTSSRETGVPVDSFLQRDLIQGQIYYQHSGEEQFEDSFDFTLSDSHQ
PPNLSQAYTVVVHVFPVKDQLPVEVSGSVRSLTVKETEAVYITQTHLHFTDREHPGTDLT
YVITKPCFSPLHPGLMDAGRLFYTDTTNAMKRDHMVPVLKSFTQHAVNHMKVAFMPPVED
IGPVPLFVQFVFSVSDHHGGTVSGLLFNITVTPVDDQAPEAFTNLLRAEEGGGAFVTEEH
LLVRDRDSRQEDLRVEVQRTARHGRLELQGRTLLQGDKFTLQDLRGLRLRYIHDDSETTE
DEVGLKVTDGLNSADVVLPIQILPMNDEPPQLGGGLRGELSCEEGGRVQVTVDYLSATDR
DSDDSRLTYMLARSPGRGELQRAGLTVDKFSQQDLLQGHIYYVHTGGEIGPEPVFDTVTL
IISDGEAGGLEGCCHGDAPPPPVPLHGTLPVYDLNITVLPVNNKVPTVTLGESLLVVDEG
SSVCLCGGVLGASDPDSPPDQLTFHLETPPLHGFLENTLPTPGSEKSNVGVRVESFSLVH
LTSGFINYVQSEHKGAEPTVDQLSVSVSDGLHRSAPVPFYIIINPTNDETPSLLLANFTV
KEGGIRELTPSILNGLDLDAPPDLLTVTVVQPPAHGRLINGIYGTEMSRYKEMGADLLQR
SLPVTSFTLQELRQGMKIMYMHDDTETLKDTVALQLTDGVHTVQGTAQVTVLPVNDEKPR
LIKNAGLEVDSGEHRVISSVALEAEDLDTPPNQVYYFLNAAPRFGKLQLKTESGWTQLSA
GQNFTQDDVEMNRLWYKHTAAASAAGFKGQDGFPFTLSDLDNESPAQSFFISVHAVQKGY
IVLLSKAVHLREGQRVVLNTDVLLASDSAGRPGELIYTVTVPPRRGLVHAVQQPGVPLTR
FTQLDVAAHRVCYTHDNSHESESDSFSFVVTNGVSSRSGTLHLSVEHGDRIPPTLTRNAG
LRLPDGATETITADRLQLSDPDTAAANLSYIVTQPPRYGKLLRRGVPLAPRLKFSQTDVD
ELSLAYRHDPGSPAEIDRFYFLPTDGNNRGYLESGQLREEPAVFNIQVDRVDRTPPSLTT
RQSPSAVVDLGGERYGIFITNKHLQASDPDSPTEELEFSISRPPHFGYLENALTGAYIKG
RFTQRDVDQRAVAFVLPADMEVTADSFQFRLTDPAGNSMLPEILELSWSRVELSATCYRT
CETAGTLQIQVQRSGKSIDPAYVAIQVEEGSAKPGRDFTHSTASLVQFDPGVSVKTWNIY
LIDDGLEENHETFTVTLKNPKNAVLGQRTSASVEIIDPRGGRCNPDDLVEEDEKQLPPPP
RLPVPPRPEEEDDPVTDIEAELLWENQPHPPRGDVPHRRPYRDYGEGEPQDQAAPSYSHI
HYHSRQLPGTGTGSTGSTGHRVRHGRLKVPLSGERKSEEKVWTFHSLTPLRLEELKPGDA
GWSRSPRSRLLPELRVGDAPQMDHAAPRHHPELRQHKTGKSVSSSCPDGWTHYRRRCYIL
SPSVASWASAERTCSLLFNSSLTGVRSRRDMAWLWRFAGKKPFWIGLSGGPGRWMRADGR
SVSFSRLKGASPGQSGSDHGSDCVLVENPRSWISTSCSAETQRTFICSSPAHTH
NT seq
6465 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgtcagcatgttgttgctgctggcgttgacggccgtctccaacgggagtttg
gttgtggtaaacttgggcgtggaggtcgccaggggtcgctcagtgttcatcacagagaag
gagctgaggatcagcgtggatcccaccgccgactgtaaggtggaggtggtgatgaacgaa
cccgtcactcagagagtggggaggctgactccacaggtgtttgactgcagcttcctagag
gatgaggtaaaatacgtccacaacggcagccccctgctggacgaggacacggtgtcgcta
agagtctacagattcacatcttcagacacactggtggagacggtggctctgcttgtacga
gtggtggactccggttctggtgttgttgagttgggcagtgctcctctggtggtccctcag
ttcttcggtttatccaacgccatcgacagctctgtgctccgcatcaggaccacagccgac
ctggtctgcaccatcagactgatgaccactgacactaacgtccctgctctgggtcagctg
gtgagggaggaggactccacacagaggaagggcagagagacagcagcgctctgtcctgga
aacaaaccctgtcttcatgacaccaaggaggttcgtttcctcaaaaccagctgccaggac
ttcctgagctccggtctgaagtaccagcacctcagccctccatcaccagagattgactac
atccccatcagggtggagctgagggagcagaccaccagggcccagctggagacagaggcg
gtatggttgccagttttgatccatggtgcgatgcagaaccagcctcccaagggcgctttc
atggcctccttcatcctggaggtggaccagttcatcctcaccccgctcaccactgcggcc
ttggacgccaaggaccaagagacgccgcaggagaggctggttttcaacgtgaccgtcccg
cccgccgagggctacatcacccacctcgacgaccacaccaagcccatcaggtctttcacc
tggctggacctccatgagatgaaagtggcctaccagccccccaacagcagccaatcacac
cgaaggaattatgaggtggagttccaggctatagacggttcctatatgaccagcccgccc
atcacggtccacatctccatcagggcagctgaaacaaacgcacccagagtctcctggaac
atgggtctggacctgttggagggtcagtcccgaccaatcacctgggaggagctgcagata
gtcgacagcgacaacatcgatgccgtctacctggtggctgtggacggacctctacacggc
cgtctcagtgtcagaggtgggaaggcgtttatgttccgcgtgcgggacctgagggaaggc
gtggtcgtctaccatcactccgacagcgacaccacccgcgaccacgtcgtcttccgcatc
agcgacggccgtcacagcatccgccacaagttccccatcaacatcctgcccaaagacgac
tccccgcctttcctcatcaacaacgtggcggtggaggtgcaggagggcgggtctgtgagg
ctggaggagtacgtgctgtcagcctccgacctggactccagcgatgactacatcctctac
cagatggtctcctccccccgggccgggcagctagtcaggaagacctccagccgggagaca
ggagttccagtggacagttttctgcagagagatctgatccagggtcagatctactaccag
cactcaggagaggagcagtttgaggactccttcgacttcacgctgtctgacagccaccag
ccgcccaacctctcccaggcgtatacggtggtggtccacgttttccctgtgaaggaccag
cttcccgtggaggtttccggcagcgttcgctctctgacggtgaaggagacggaggcggtt
tacatcacccagactcacctccacttcacggacagagaacatccaggcaccgacctgacc
tacgtcatcacgaagccctgcttcagcccactgcatcctgggctgatggacgcaggacgt
ctgttctacacagacaccaccaacgccatgaagagagaccacatggtgcccgtgttaaag
tccttcacacagcatgcagtcaaccacatgaaagtggcctttatgcctcccgtggaggac
atcggcccggtgccgctgttcgtccagttcgtcttctccgtcagcgaccaccacggcggc
accgtctccggcctcctcttcaacatcaccgtcacccctgtggacgaccaggcaccagag
gccttcaccaacctgctgcgggcggaggagggcggaggggcctttgtgacggaggagcac
ctcctggtccgggatcgggacagcaggcaggaggatctgagggtggaggttcagaggacg
gctcgtcacggccgactggagctgcagggcagaacgctgctgcagggagacaagttcacc
ctgcaggacctgagaggacttcggctcaggtacatccatgatgactctgagaccactgag
gatgaggtcggtctgaaggtgacggacggtctgaactcagccgatgtggtcttgccgata
cagatcctgccgatgaacgatgagcctccccagctgggtggaggtctgcggggggagctg
agctgcgaggaggggggccgggtccaggtgacggtggactacctgtcggccacagaccgg
gacagcgacgactccaggctgacctacatgctggcccggagtccgggtagaggggagctg
cagagagccggactgactgtggacaagttctcccagcaggacctgctgcagggacacatc
tactacgtccacacaggaggcgagatcggacctgagccggtgttcgacaccgtcaccctc
atcatctctgacggcgaggctggagggctggagggctgttgccacggagacgcgccaccc
ccgcccgtccccctccacggcacacttcctgtgtacgacctcaacatcaccgttcttcct
gtcaacaacaaagtccccaccgtcactctgggtgagtccctgttggtggtggatgagggc
tcctcagtttgtctgtgtgggggtgtcctgggagcctcagaccctgacagcccccccgac
cagctgacctttcacctggagactccgcctctgcacggcttcctggagaacacacttcca
acacctggctccgagaagagcaacgtaggagtccgagtcgaatccttcagcctcgtccac
ctgacctctggtttcatcaactacgtccaatcagaacacaaaggggcggagccaactgtc
gaccagctgtccgtcagtgtgagtgacgggctgcatcgctccgcccccgtccccttctac
atcatcatcaatccaaccaatgacgagacgccttctctgctgctcgccaacttcaccgtg
aaggagggcgggatcagggagctgactccgtccatactgaacggtctggatctggacgcc
cctccggacctcctcaccgtcacggtggtgcagccgccggcccacggccgcctgatcaac
ggcatctacggcacagagatgagccgctacaaagagatgggagctgacctcctgcagagg
agcctccccgtcacctccttcaccctgcaggagctccggcaaggcatgaagatcatgtac
atgcacgatgacacagaaaccctgaaggacaccgtggctctgcagctgacagatggcgtc
cacacagtccaggggacggctcaggtcactgtgctgccggttaatgacgagaaaccaaga
ctgatcaagaatgctgggttggaggtggactctggtgagcacagggttatttccagtgtg
gctctggaggccgaggacctggacacccccccaaatcaagtgtactacttcctcaatgct
gcgccacgatttggaaaactgcaactgaagacggagtcgggttggacccagctgtcggcc
ggtcagaacttcactcaggacgacgtggagatgaaccgtctgtggtacaaacacacagcc
gccgccagcgccgccggcttcaaaggtcaggacggcttccccttcaccctcagcgacctg
gacaacgagtctcctgcccagagcttcttcatctccgtccacgctgtgcagaaaggttac
atagtgctgctgagcaaagcagtgcatctcagggaggggcagcgggtcgtcctgaacacc
gacgtcctgctggcgtcggactcggcgggtcgtccgggggagctgatctacactgtgacg
gtcccgcctcgacgcggcctcgtccacgccgtccagcagcccggagtcccgctgacccgc
ttcacgcagctggacgtcgccgcacaccgagtgtgttacacccacgacaacagccacgag
tccgagtccgactccttcagcttcgtcgtcaccaacggcgtctcgtcccgcagcggcacc
ctccacctctccgtcgaacacggtgaccgcatcccccctaccctcacccgcaacgccggc
ctccggctgccggacggagccacagagaccatcaccgccgaccggctgcagctcagcgac
cccgacaccgccgcagccaacctgagctacatcgtcacgcagccaccgcgctatggtaaa
ctgctgcgccggggagtgccgctggcgcctcggctgaagttctcccagacggacgtggac
gagctgagcctggcttaccgacacgacccgggcagcccggcggagatcgacaggttctac
ttcctgccgactgacggaaacaacagaggatacctggagtctggacagctgagagaagag
cccgctgtgtttaacatccaggtggatcgggtggacaggacgcctcccagtctgaccacc
aggcagagtcccagtgcggtggtggatctgggcggcgagcgttacggcatcttcatcacc
aacaaacacctgcaggcctccgacccggacagccccacagaggagctggagttctccatc
agcagacctccgcacttcggctacctggagaacgccctcacaggagcctacatcaagggt
cgtttcacccagcgtgacgtggaccagcgtgccgtggcgttcgtcctcccggccgacatg
gaggtgacggccgacagcttccagttccgcctcaccgacccggcaggaaacagcatgctg
cccgaaatactggagctgtcctggtcccgggtggagttatcagcgacctgctacagaacc
tgtgagacagcagggactcttcagatccaggtccagcgcagcgggaagagcatcgacccg
gcctacgtggccatccaggtggaggaaggatcggccaaacccggcagagatttcactcac
agcacagccagtctcgtccagtttgacccaggtgtcagtgtgaaaacctggaacatttac
ctgatagacgacggtctggaggaaaaccatgagaccttcactgtcaccctgaaaaaccca
aagaacgccgtcctgggacagaggacctccgctagtgttgagatcatcgatcccagagga
ggaaggtgcaaccccgatgacctggtggaggaggacgagaagcaactccccccacctcct
cgtctccccgtccctcccaggccggaggaggaggacgaccccgtcaccgacatcgaggcg
gagctgctgtgggagaaccagcctcaccctcccagaggagatgtcccgcaccgccggcct
taccgggactacggagagggggaaccgcaggaccaggcagcccccagttacagccacatc
cactaccacagcaggcagctgccagggacaggcactgggagtactgggagcactggtcac
agagtcagacatggacgactaaaggttcctctgtcaggagagaggaagtccgaagagaaa
gtctggacgttccacagtctgactcctctccggctggaggagctgaagcccggcgacgcc
gggtggagccggtcgcctcgcagtcgcctcctgccggagctccgggtgggagacgcccct
cagatggatcacgcggcacccagacaccacccggagctacgccagcacaagacggggaag
tcggtcagcagctcgtgtcctgacggttggactcactacaggagacgctgttacatcctc
agcccgtctgtggccagctgggccagcgccgagagaacctgctccctgctgtttaacagc
agcctgaccggtgtgcggtccagaagagacatggcctggctgtggaggtttgcagggaag
aagccattttggatcggtctgtctggaggtccgggtcgctggatgcgggccgacggtcgg
tcggtgtccttctccagacttaagggggcgtcgccaggccaaagcgggtctgaccacggc
tcagactgcgtgctggtcgaaaaccccagaagctggatctccacaagctgctccgccgaa
actcagcgtacgttcatctgttcatcgccggctcacactcactga
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