Xiphias gladius (swordfish): 120791822
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Entry
120791822 CDS
T07311
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03022
Basal transcription factors
xgl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120791822 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
120791822 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120791822 (ercc2)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120791822 (ercc2)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120791822 (ercc2)
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120791822 (ercc2)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120791822 (ercc2)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120791822 (ercc2)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120791822 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
Motif
Other DBs
NCBI-GeneID:
120791822
NCBI-ProteinID:
XP_039986497
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All DBs
Position
LG7:complement(25676368..25690237)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGESNTFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNLPACRFYEEFDAVGRQVPLPAGIYNLDDL
KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKETDAAKLKEEYRRLVEGLKEANVARE
TDIYLANPVLPDEILQEAVPGTIRTAEHFVGFLRRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLQQLESEEMLQKITQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgagggtctgttggtgtattttccgtatgactacatctatcctgag
cagtactcctacatgctggagctgaagaggacactagatgccaagggtcatggagtcctg
gagatgccgtcaggaacagggaagaccatctccctgctgtctctcatcgttgcctaccaa
agggcctttcctttggaggtgaccaagctaatatactgctccagaacagttcccgagatc
gagaaggtcgtggaggagctgaggaagctgatggagttttattccaaggaaactggagaa
agcaacaccttcttggctctggctctttcctcaaggaaaaacctctgcatccaccctgag
gtgagctccctgcgcttcggtaaggaggtcgatgggaagtgccacagtctgacagcatcg
tacattcgtgcacaacgccacagcaaccccaacctgcctgcctgtcgtttctacgaggag
tttgacgcagtcggccgacaggtgcctcttcctgctggcatctacaaccttgacgaccta
aaggacttcggcaggaggaaaggctggtgtccctactatctggcacgctactcaatcctg
catgccaacattgtggtgtacagctaccactacctgctggaccccaagatagccgacttg
gtgtccaaagagctggcgaagaaatctgtggtggtgtttgatgaggctcataatatagac
aacgtatgtatcgactccatgagtgtgaacatcaccagacgaacgctggaccgctgccag
aacaacgtggacacactccagaacaccatacacaagataaaggagacggacgctgccaag
ctgaaggaggagtacaggcgactggtggaggggctgaaggaagccaatgttgccagggaa
acagacatctacctcgcaaatccagtgttgccagatgaaattcttcaagaggcagttcct
ggtactattcgcacagctgagcactttgttggtttcttgaggcgtttcctggagtatctg
aagtcccgcctgagggtccaacacgtcgtacaggagagcgccccgcagttcctcaaagac
atcttcgacaaagtctgcatcgaccgcaagcctcttaggttttgtgcagagcggttgcag
tcgttactacgaactctggagattgctgacattgcagacttctcagctgtcacactcatc
tctaactttgctaccctggtcagcacctatagccaaggttttaccataatcattgagccc
tttgaagacagaactccaaccatcgccaaccctgtgctgcacttcagttgcatggaccca
tctatagccatcaaacctgtttttcagcgatttcagtcagtcgtcatcacctcggggact
ctctctccactggacatctatccccgaatcctggacttccgccccgttaccatggcatcc
ttcaccatgacgctggcaaggacctgcctctgtcctctgattgttggaaggggaaatgac
caggtggccctgagctcaaagtttgagaccagagaagactttgctgtgattcgtaactat
ggtaacctacttctggagatgtctgccatcgttcctgacggcattgtggcgtttttcacc
agctacatctacatggagaacatagtggcgtcttggtatgagcagggtatcctggagaat
atccagagaaacaagctgatcttcattgagactcaggacgctgcagagacaagcatggcc
ctggagaaataccaggaggcatgtgagaacggcagaggagccatcctcctgtctgtggcc
agaggaaaggtgtctgaaggaatagatttcgtgcaccattttggccgggcagtcatcatg
tttggagtgccttatgtttacactcagagccgcatcctaaaggctcgtctggagtacctt
cgggatcagtttcagatcagagagaatgacttcctaacgtttgatgccatgcgtcacgca
gctcagtgtgtgggcagagccatcagaggcaagaccgattacggactcatgatttttgct
gacaagcgttatgcccgagcagacaaacgtgggaagcttcctcgctggattcaggagcac
attaacgacggcagtctgaacctcaccgtggacgaggccgtccagctctccaagcacttc
ttgcggcagatggctcagcctttcagacaggaggaccagttgggtctgtctctgttgact
ctccagcagctggagtcagaggagatgctgcaaaaaatcactcagatcgctcatcagact
tga
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