KEGG   Xiphias gladius (swordfish): 120792016
Entry
120792016         CDS       T07311                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl04510  Focal adhesion
xgl04512  ECM-receptor interaction
xgl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120792016 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120792016 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120792016 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xgl04147]
    120792016 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:xgl00536]
    120792016 (col4a4)
Exosome [BR:xgl04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   120792016 (col4a4)
Glycosaminoglycan binding proteins [BR:xgl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   120792016 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 120792016
NCBI-ProteinID: XP_039986928
LinkDB
Position
LG7:27266038..27302426
AA seq 1667 aa
MLLTSCSAPCSYTWLWCLLMILTAPPAVLGGDHTEPCAGRDCSTCQCFPAKGARGAPGGL
GQQGHQGPPGFPGPQGPPGEKGQRGDEGPTGATGLKGDLGSVGVLGFPGLEGVPGHPGPA
GGPGFPGLDGCNGTRGERGDPGRPGEQGPDGEPGFPGMKGFPGDPAVYFIQYPGAPGDVG
PSGRPGLQGEQGLPGPIGNLGPAGLDGTNGPPGLPGSRGPPGEKGRSLPGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGEQGPRGIKGVCGVGGSPGLDCPPGIKGEKGIPGFPGNRGI
SGNPGLLGEKGFKGIQGNPGLPGLIGREGPKGMMGDPGPKGLPLEIDVTHTGDGGDAGAP
GQRGPTGDMGLMGMHGPPGVPGRSIPGSPGVLGQSGIPGSKGDRGDPGQIFLDGPTPGEP
GKPGRPGFRGPKGEPGIPGRYCLPGAPGKSGEQGEQGPQGAQGFPGFKGTRGDCACGPPI
ILMGPPGPVGDFGHPGFSGVQGAPGQRGEKGILGDTGESGQQGLGGFPGIKGLKGQKGDF
IVVDIIGEKGDRGQQGPAGRQGFSGRRGLDGLPGLPGNPGPQGESFTSSPGERGFPGILG
PKGLPGPLGSPGADVVGAIGQRGAPGDPGPPGLPGPPGPKGATGDTLPCVPRNPGPPGEK
GDTGSTGYTGFPGPSGFRGITGTDGIKGDKGQSGLPGLPGRQGPPGFVGDTGEEGPEGFS
YGGDPGSPGIPGFPGLRGPAGDPDVGPSGPIGFPGQLGSQGPKGVPGPPGKDGLQGVLGL
AGAPGAKGQRGQDGAPGITGPQGPSPNFCDIGRPGSTGSFGPRGPIGPPGFQGEKGEIGV
VGAPGFGPRGPVGKPGSPGFPGFLGPQGPPGPSGDSGLPGPNGQNGLLGLQGLYGVPGAP
GQTGALGAPGRTGERGFNGRDGAQGCEGPKGEKGCKGPPGPPGETKGIPIKGETGKQGPP
GINGFPGPRGSKGVIGATGKPGYPGINGAQGIIGPPGPPGPCGKPGSLGPPGRQGPPGFI
GFPGETGDSGDPGCLGNSGEPGHQGCQGQKGDKGDSIGCPGLPGNKGPPGDFGTPGPSGP
RGDPGGPGFIGSPGQKGCKGDPGQRGDPGQPGVIGPSGPRGRSGCAGLPGQAGDDGPPGP
QGCSGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVQGPPGLKGLPGDKGPPGPPGPFGTS
QPGRTGPKGPPGPKGPPGDCGLPGKPGPNCKDPVPGPRGDPGCPGPDGVPGFPGDIGDPG
RNPPVPGDDGDNGETGCQGPIGPKGSPGPKGLPGIAGDCGMKGMKGSQGLMGLPGNRGPR
GSPGSRGLPGPKGLDGLVGPKGEKGGVSPCPTYPPPQRGSPGPHGPPGNVGEPGLQGELG
QKGLKGIRGDPGSEGPIGFSGSPGPDGNRGEPGRQGESGAVGAKGDSGPIGGCGPPGPSK
TLNSGFLLVRHSQSKNIPTCPLNMRALWNGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGACSYASRNDKSYWLSTTAAVPSIPVGGPSIEEHISRCVVCEAPSSPVALHSQ
TSNQPDCPPRWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTC
HYFANIYSFWLTRVEMSTSASNSSSTTLTEGWQQRGNIGRCNVCMRE
NT seq 5004 nt   +upstreamnt  +downstreamnt
atgctgttgacttcctgctctgccccctgcagctacacctggctctggtgcctcctgatg
atcctgacagctcctccagcagttctcgggggtgaccacacggagccgtgcgctgggcgg
gactgctccacctgtcagtgtttcccagccaaaggagcgaggggtgctccaggtggtctg
gggcagcagggccatcaggggcccccgggcttcccaggtcctcaggggcctccaggagaa
aaaggccagagaggagatgaggggccgacaggagccacaggactgaaaggagacctggga
agtgtcggtgttcttggttttccgggtttagagggagtcccgggtcacccgggtcctgct
ggaggccctggttttcctggtctggatggatgtaatgggaccagaggggagagaggagat
cctggacgtcctggagaacaaggacctgatggagaaccgggttttccaggaatgaagggg
tttcctggagatccagccgtctacttcatacagtaccctggagcacctggagacgtcggg
cccagtggacgtcctggactgcagggtgagcagggtctccctggcccaatcggaaatctg
ggtccagcaggactggacgggaccaacggtccccctggtctgcctggttccaggggtcca
cctggagaaaaaggtcgatctctgcccggacagaaaggagacgagggggatcagggcctc
caggggcccccggggccgtttgagtacgtcgaccctccggaagacctgtacattaaagga
gaacagggtcctcgagggatcaaaggagtctgtggagttgggggatcgccgggtttggac
tgtcccccaggaatcaaaggagagaaagggattccgggattccctgggaacaggggaatt
tctggtaaccctggtctgctcggagagaaaggattcaaggggattcaaggaaatccaggc
ctcccaggtctgattggacgagaaggaccaaagggcatgatgggagatccaggtcctaaa
ggcctccctctggagatagacgtcacacacacaggtgatggcggggacgccggggccccc
ggacagagaggccctactggagacatgggtctgatgggaatgcacggtccccccggagtc
cccggcagatccatacctggatcgccaggtgttttgggtcagagtggaattccaggatcc
aaaggggacagaggagatccaggtcagatcttcttagatgggcccacacctggtgagcct
ggaaaaccaggacgtcccggatttagaggaccaaaaggagaaccagggattccaggtcgt
tactgtcttcccggggccccaggaaaatctggagagcagggtgaacagggaccccaaggg
gctcagggcttcccggggtttaaaggcactcgtggcgactgtgcttgtggacctcctatt
atactgatgggcccccccggccctgtgggtgacttcggtcatccggggttttcaggagtc
cagggtgccccagggcagagaggagagaaaggtatacttggagacactggagagagcgga
caacagggtctgggtggatttccaggcatcaaggggctcaaaggtcagaagggagatttc
attgtggtggatattataggtgagaagggagacaggggccagcagggccctgcaggcaga
caaggtttctcagggagaagaggacttgatgggctccctgggctccccggaaaccccggt
ccacagggtgagagtttcaccagctctcctggagaaagaggcttcccaggaattttaggg
ccaaagggattaccgggaccactaggctccccaggagcagatgtagttggagcaatagga
caacgtggggcccctggggacccaggacctccaggactcccgggtcccccagggccaaag
ggggctactggtgacactctgccctgtgtacccagaaaccctggcccccccggggagaag
ggagacactggaagcacaggttacacaggattcccaggtccttcaggttttcgtggcatc
actggaactgatggaattaaaggagacaaaggacagtctgggctccctggactacctgga
cgacaaggacctccaggttttgttggcgataccggagaagaaggacctgaaggcttcagt
tatggaggagatccaggctctccagggatcccaggctttcctggactcaggggcccagca
ggggaccctgatgtcgggccctcgggacccatcggcttcccgggacaactgggttctcag
ggacctaaaggagtccctggccccccaggcaaagacggactacaaggagtcctgggtctg
gctggggcccctggagccaagggccagagaggacaggatggagccccaggtataactggt
ccccaaggaccctcacctaacttctgtgacataggaagacctggttccacgggctcgttt
ggccctcggggacccattggacccccaggctttcagggggagaaaggtgagatcggggtg
gtgggtgcgccaggttttggccctcgaggccctgtaggtaaaccgggttctccaggattc
ccagggttcctggggccccagggcccccctggccccagtggagactccggactgccaggg
cccaatggtcagaacggtctgttggggctccaaggcttgtatggagtgccaggggctcca
ggacagaccggagcccttggagctccagggaggacgggggaaagagggttcaatggacga
gatggagctcaaggatgtgaaggaccaaaaggagaaaaaggatgtaaaggacccccgggg
cctccaggagagaccaagggtatccccattaaaggagagacaggaaaacaaggacccccc
ggcatcaatggcttccctggaccacgaggtagtaaaggtgtgattggagctacaggtaaa
ccagggtatccaggcatcaatggagcccaaggcatcataggacccccagggcccccagga
ccctgcggtaagccaggatccttaggaccacctggacgtcagggacctccaggattcatt
ggcttccctggagaaaccggagattcaggtgacccgggatgtctggggaattctggagaa
cctggtcaccaaggatgtcaaggacagaaaggtgataaaggagactctattggttgtcct
ggtctacctggaaacaaggggcctcctggagacttcgggaccccaggaccttctggacct
cgaggagatcctggaggaccaggtttcattgggtctccaggacagaaaggatgcaaagga
gatccaggccaacgtggagacccgggtcaaccaggtgtgatcggtccctcaggtccaaga
ggtcgttcgggctgtgcgggtcttcctggtcaagctggtgatgatggtcctccaggaccg
cagggctgctcgggactccaaggtcctcctggacctctgggacttcatggactggacgga
ttgaaaggagtgaagggggacatgggcaccagaggtctgggtgtgcagggtcctccaggt
ctcaaaggtctcccaggggataagggtcctccaggtcctccaggtccctttggtacatcc
cagcctggacgaacaggacccaaaggccccccaggacccaaaggacctccaggggattgt
ggacttccaggtaaacctggaccaaactgtaaagatccagttccaggacctcgtggagac
cctggttgtcctggaccagatggagtgccaggttttcctggggacattggggatccaggt
cgaaaccctccggtacctggggatgatggggataacggggagacaggatgccaggggcca
ataggcccaaagggatctccagggcccaaaggactgccaggcatcgcaggagactgtgga
atgaaaggtatgaaggggtcacaaggtctgatgggactacctggtaatcggggtcctaga
ggttctcctggttccagagggcttccaggaccaaaaggacttgatggactggtgggtcca
aagggagagaagggaggagtctccccctgccccacttaccctcccccccaacgaggctcc
cccggtccacatggcccccctggtaatgttggagagcccgggctccagggagaattgggc
cagaagggactcaaaggtataaggggggatcctggatctgagggaccaataggcttttca
ggttccccaggtccagatggaaaccgaggagagccaggccggcagggggagagtggagca
gtgggagccaagggtgattctggtccaatcggtggctgcggtcctcctggaccatccaaa
accttgaactctggcttcctgttggtgaggcacagccaatcaaagaatattcccacctgt
ccattaaacatgagggccctatggaacggatacagcctgctgtacctggagggtcaggag
aaggctcacactcaggacctgggtcaggcggggtcctgtatgcgtgtcttttccaccatg
ccgttctcctcctgtaacatgggagcctgctcctacgccagtcgtaacgataaatcctat
tggctgtcgacaacggcggccgtccccagcatacctgtgggcggaccctccattgaggag
cacatcagccgctgtgtggtgtgtgaagccccctcctcacctgtcgcactgcacagccag
acctccaaccagccagactgcccccccagatggacgagcctgtggaccggatactccttc
ctcatgcatacaggtgcaggggatgagggcggcggccagtctctgacatcatcaggaagc
tgtctgacagacttcagggcccagcccttcgtggagtgtcaggggcctcgaggaacctgc
cactacttcgccaacatctacagcttctggctgaccagagtggagatgagcacctccgcc
tccaacagctcctccaccacactgaccgagggctggcagcagagggggaacatcgggagg
tgcaacgtctgcatgagggagtga

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