Xiphias gladius (swordfish): 120792103
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Entry
120792103 CDS
T07311
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03030
DNA replication
xgl03420
Nucleotide excision repair
xgl03430
Mismatch repair
xgl03440
Homologous recombination
xgl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120792103 (rpa1)
03420 Nucleotide excision repair
120792103 (rpa1)
03430 Mismatch repair
120792103 (rpa1)
03440 Homologous recombination
120792103 (rpa1)
03460 Fanconi anemia pathway
120792103 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120792103 (rpa1)
03032 DNA replication proteins [BR:
xgl03032
]
120792103 (rpa1)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120792103 (rpa1)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120792103 (rpa1)
DNA replication proteins [BR:
xgl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120792103 (rpa1)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120792103 (rpa1)
MMR (mismatch excision repair)
120792103 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
120792103 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
RADX
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
120792103
NCBI-ProteinID:
XP_039987079
LinkDB
All DBs
Position
LG7:complement(19968305..19994095)
Genome browser
AA seq
600 aa
AA seq
DB search
MTKLSEGAIEALSNGTGGNDAVLQLVNIRKIDGGNGPARFRVMMSDGRHTLSSFMLSTQL
NCMAEDNRLAPNCICILKRHVTNILKDGRRVVIILEIDVIKPAEDVAGKIGDPTPYTEGQ
SKGLQSAPNPESRPPLQAQNKNEMNRGFNRDFGKKAPSAVPSTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKSAIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFYSLIEVGKV
YYISKGSLKIANKQYTSLKNDYEMTFNGESTVIPCEDSCDVPMVQCDFVSIGDLENRDKD
AIVDVIGVCKTVEEVTRLTTKANREVSKRTLSVMDMSGKVVTVTLWGEEAEKFDGSGQPI
VAIKGAKLSDFGGRSLSASFSSTVMINPDIPEAYKLRGWYDKEGHAMDGQSLTELKGGSG
GGNTNWKALSDVKTEHLGHADKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNET
AFDEVFQQANFNTFVFRNRVKLETYNDESRIKATVMEVKPVDHKDYSKRLIMNIRKLAAQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctctcggagggtgcgatagaggctctgtcaaatggcaccggtggcaacgac
gcagtgcttcagttggtgaacattcgcaagattgacgggggaaacggtccagctcgcttt
cgggtgatgatgagtgatgggcggcacactctgtcctccttcatgctctccacccagctg
aactgcatggcggaggataacagactggcccccaactgcatctgtattctgaagaggcat
gtgaccaatatactgaaggatggacgacgggtggtgatcattttggaaattgatgtcatc
aagccagctgaagatgttgctgggaaaataggtgaccctactccttacactgagggtcag
tctaaaggcctgcagtcagctccaaaccccgaaagccgccctccacttcaggcacaaaat
aaaaatgaaatgaacagaggtttcaatagagactttgggaagaaggccccatctgctgtg
cctagtactccagggggcagctccaaagttgtgcccattgccagcctcaacccctaccag
tccaagtggaccatccgtgctcgtgtaaccaacaagagcgccatccgtacatggagcaac
tctcgtggtgacggcaaactcttctccatggagattgtggatgagagcggagaaatacga
gtgactggtttcaaccaagaggtagacaagttctacagcctgatcgaggttggcaaggtc
tattacatctccaagggctccctgaagatcgccaacaagcagtacacatcactgaagaat
gactatgagatgacattcaatggagagtccacagtcatcccctgtgaagacagctgtgat
gtccccatggtgcagtgcgactttgtgtctattggtgacctggagaacagagacaaagat
gccattgtcgatgtgatcggagtgtgcaagactgtggaagaagtgacccgcctcacaaca
aaggccaacagagaagtgtcaaagcggacactcagtgtgatggacatgtctgggaaggtg
gtgactgtcacactgtggggagaggaagcagaaaagtttgatggctctggacagcccatt
gtagccattaagggggcgaagctctcagactttggaggccggtccctttctgcatcattc
agcagcaccgtgatgatcaacccagacatccctgaggcatataagctcagaggctggtat
gacaaggagggccatgccatggatggacagtctttgacggagttgaaaggtggcagcggg
ggaggaaacaccaactggaaggctctgtctgacgttaagactgagcacctgggacatgca
gacaaggcagactactacacctgcatagccaccatagtgtacctgcgcaaggaaaactgc
ctttaccaggcttgcccgagccaagactgcaataaaaaagtggtagaccaacagaatggc
atgttccgctgtgaaaagtgtgacaaagagttccccaacttcaagtaccgtctcatcctt
tctgccaacattgcagattatggagacaaccagtgggtgacttgcttccaggagagtgca
gaggccatcctgggccagaatgcagcttacctggggcagctcaaggactcgaacgaaact
gccttcgatgaggtcttccaacaagccaacttcaacacgtttgtcttccgcaacagagtg
aagctagaaacgtataatgatgaatccaggatcaaggctacagtgatggaagtgaagcct
gttgaccataaggactacagcaagaggttgatcatgaacataaggaaactggccgcccag
taa
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