Xiphias gladius (swordfish): 120792259
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Entry
120792259 CDS
T07311
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04382
Cornified envelope formation
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04518
Integrin signaling
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120792259 (col4a3)
04518 Integrin signaling
120792259 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120792259 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120792259 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120792259 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xgl04147
]
120792259 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120792259 (col4a3)
Exosome [BR:
xgl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120792259 (col4a3)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120792259 (col4a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120792259
NCBI-ProteinID:
XP_039987265
LinkDB
All DBs
Position
LG7
Genome browser
AA seq
1687 aa
AA seq
DB search
MEAPGGPRRRLFPLLVLLLCCCSSASGHAEREAFSTSTLTPSRIGTMLERVCHCSGKSLC
HCDGVKGQKGEPGFHGEDGLPGMIGYPGNEGHQGSAGEKGDHGAAGIPGLKGARGLPGKP
GFPGPPGLPGLPGHEGQIGRPGFPGCNGTKGDVGYPGFPGVPGPAGFQGPSGLPGTKGET
RVYPVSQPTRGQTGPQGPEGQKGLRGDPGQLGFPGPPGPAGLPGRPGFLGLLGEKGQEGL
SPVIPGPRGQKGDRGPPGIPGQKGIKLYAEGPKELKGEPGEGGEKGCRGLSGLPGKPGVK
GEKGEQGDEGSLGKQGKDGLTGELGYQGDPGARGYLGPPGIEGATGERGERGPPGLPGET
VFNRRFLKGQRGLPGPRGPPGGPGEQGLIGFPGLQGDPGVALPGPPGPQGPPGFIGPKGE
PGEPGPLIVGPPGQIGIPGGPGAEGEPGEPGIPDFLQGDVGPPGAKGPRGLMGHPGPRGQ
DGPPGEKGEKCFVCPLVSLTPGPPGKPGEPGENGVTGPDGFPGPKGYKGVKGIRGPPGPQ
GPFGIPGIPGPVGPVGNPGVMQRVGQKGEEGTRGVPGPAGLEGTDGPQGAPGPKGVLGQR
GNPGPPGLKGDRGLLGERGPRGLIGQRGPPGPPGIGAPGPPGPQGSAGVLGQRGIAGKPG
EKGSPGEIKTYPGDPGQKGEKGLSGNPGPEGVTGPPGYQGFVGPKGEKGDKGFSVQGPPG
FPGVKGHKGLPGAPGLSSFGIKGRAGPSGPPGMPGPKGEGGIGFPGQQGQSGPQGEDGSV
GPQGNPGPQGADGGPGPTGQDGPPGPNGRSGLDGVPGPVGTVGICLEGAPGPKGEEGQMG
VIGFTGARGSKGVQGDPGLPGIGALGRQGPYGAPGFDGPAGPVGDVGLKGLRGTNGEPGS
PGIRGDMGPPGLGGNPGDDGKPGETGRQGPKGQMGVDGVRGSQGPPGPQGDQGETGPRGT
HTSVEVYGDPGDPGDIGPIGLSGLKGERGFLGPQGSDGSNGIPGNTGPRGFPGDPGRDGQ
KGSSGPYGLPGNPGEMGKPGFKGEKGCAGPCGIPGSDGKPGSAGPKGVKGEPSPPGPGSK
GCPGDKGNPGCPGYSGGKGKPGDTGIFGSPGDCGPCGPKGQAGPLGCRGPPGSPGEKGFD
GPTGINGPPGPTGLPGNKGAPGDPGPAGPRGNQGQDGIPGPPGEKGAMGAPGIGPRGTEG
KQGPPGCSGEKGPPGPCGPPGPCGPGGNPGCPGPPGPPGPPGFPGREGICTEGGKGDNGM
PGGRGLTGPPGCKGPPGPPGPGNKGEKGYKGATGDSGPPGCPGDPGPQGKLGVDGPRGTA
GQKGLTGETGDTGPVGLKGDEGPRGNTGSRGPPGPPGRRGPRGTDASRAVNLIPGDKGLV
GHQGPPGQRGPPGVHGRPGYPGFKGIEGQPGERGPEGRPGLKGDEGDRGFPGQKGIAGPH
GPVGAKGIPGLPGPTVDSPEKDGFLFTRHSQNLFVPRCPAGSSEVYSGYSLLFINGNNRA
HGQDLGTLGSCLPLFTTMPFLFCNTDSTCRYASRNDYSYWLSTNETLPGSVPFISGQLLE
SYISRCTVCEARANVIAIHSQTSFIPDCPSEWDRLWFGYSFVMETGVGAEGSGQPLASPG
SCLEYFRKIPFIECHGRGTCNYYTDSYSYWLAALNPSDMFSKPKPRTDTREFPGSLISRC
QVCMKRL
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgggcggcccgaggcggaggctcttcccgctgctggttctgctgctctgc
tgctgctcctccgcttcggggcacgccgagagggaggcgttctccacctccacactgacg
ccgtcacgcatcggtacgatgctggaacgggtgtgtcactgcagcgggaagtcgttgtgt
cactgtgacggggtaaaaggtcaaaagggtgaacctggtttccatggggaggatggtctt
cctggaatgattggttaccctggaaacgagggtcaccaggggtcagcaggagagaagggt
gatcacggagcagcaggaatacctggactgaaaggcgctcggggtcttccagggaaacca
ggtttcccaggacctccaggattgccgggacttcctggacatgaaggacaaattggccga
ccaggattcccaggatgcaatgggacaaagggggatgttgggtacccaggattccctggg
gttccaggacctgctggctttcaaggtccttcaggactgccaggtacaaagggagaaaca
cgtgtctaccccgtctctcagcctactagaggacaaactggaccacaaggaccagaggga
caaaaggggctgaggggagatccaggtcagcttggcttcccgggaccaccaggacctgct
ggactacctggaagaccaggttttctggggttactgggagagaagggtcaggagggtctc
agtccagtgatcccaggtccccgaggacagaagggtgatcgtggacctccagggattccc
ggccagaaagggatcaaactgtacgccgaaggacccaaagaactgaagggagaaccaggt
gaaggtggtgagaaaggttgtcgtggactttctggtttgccggggaaaccgggggtgaaa
ggagagaagggtgagcaaggcgacgagggctcactgggtaaacagggaaaagatggactc
accggggagctcggatatcagggagacccaggggcacgtgggtacctcggcccgccaggt
attgaaggagccacgggggagagaggggaacgtggtcctccgggtcttccaggagagacg
gtcttcaatcgaagattcctgaagggccagcgtggtctccccgggccccgcggaccccca
ggaggccctggagaacaaggactcattggttttcctggactgcagggcgatccaggtgta
gctctgcctgggccaccaggcccccaggggccacctggttttattggacccaaaggagaa
ccaggagagccagggcccctcatcgtcgggcccccaggacagattggaatcccaggaggt
ccaggggccgaaggagaaccgggagaaccagggataccagatttcctgcagggagatgtt
ggtcctccaggagctaaaggtccaagaggcctgatgggacatcctgggcccagagggcag
gatggaccaccgggtgagaagggtgagaagtgcttcgtctgtcctcttgtttccctcacc
cccggacctccaggtaaaccaggagagccaggtgaaaatggggtgacaggtccagacggt
tttccaggacccaaaggttacaaaggggtcaaaggtatcagaggaccacctggtccacag
ggcccctttggtatccccggcatcccggggcccgtgggacctgtgggtaacccgggggtc
atgcaaagggtggggcagaagggtgaggaagggacccggggggttccaggacctgcgggt
cttgaggggacagacggacctcaaggagctccaggaccgaaaggtgttctgggacagaga
ggaaaccctgggcctccgggactgaaaggggacaggggcctgctaggggagagaggtccc
agaggattgataggacagcggggacctccaggacctcctggtattggtgctccaggacct
ccaggacctcaaggcagcgcaggagtcctgggacagcgaggaattgctggaaaaccaggt
gaaaagggttctccaggtgaaatcaaaacatatccaggagatcccggacagaaaggagag
aaaggtttatctggaaaccctggacctgaaggtgtgacaggacctccaggttatcaagga
tttgttggtccaaagggagaaaaaggagataaaggattttctgtgcaggggcccccaggc
ttcccaggggtaaaaggacataagggccttccaggagctccaggtctatcaagttttggc
atcaagggacgagcggggccatcgggcccaccggggatgccgggcccaaagggggaaggg
ggtatcggtttcccaggccagcagggtcagtcaggccctcagggagaagatggctctgtg
gggccccaaggaaaccccggaccccagggggcagatggaggtccagggcctacaggacaa
gacggaccaccaggacccaatggtcggagtggtctggatggtgtacccggtcctgttggt
actgttggaatctgtttagagggagctcctggacctaaaggagaggagggacagatgggc
gtcatcggattcacaggggcccggggctcaaagggagtgcagggtgaccctgggttgccg
ggtatcggagctctgggacgccaagggccatacggcgccccagggtttgatggacctgca
gggcctgtaggagatgttggactgaaaggcctcagagggaccaatggggagccagggagc
ccaggtatcagaggggacatgggtcctccaggacttggtggaaatccaggggatgatggg
aaaccaggagagacaggacgacaaggaccaaaaggtcagatgggagtagatggggtcagg
ggttctcaggggcctccagggcctcaaggggaccaaggggagaccggacctagaggaacc
catacttctgttgaggtgtacggagatcctggagaccctggagacattggacccataggt
ctctctggtcttaaaggagagaggggcttcctgggaccccagggctctgacggcagcaac
ggtatacctggaaacaccggaccacgaggatttcctggagaccccggcagagatgggcag
aaaggttcttctggaccctatggtctccctggtaacccaggagagatgggaaagccaggt
tttaaaggtgagaaaggttgtgcaggcccttgtgggatacctggctcagatgggaaacca
ggatcagccggacctaaaggtgttaaaggagaacctagtccacctggaccaggatctaaa
ggatgtccaggagataaggggaatccaggctgtccaggatattcaggtggaaaggggaaa
ccgggagacactgggatctttggttctccaggagactgtggcccctgtggccccaaagga
caagctgggccccttggatgcagaggtcctcctggatctcctggtgaaaagggttttgat
ggtcctacggggataaatggcccacctggacccacaggtctcccaggtaacaagggggct
cctggagatcctggtccagccggtcccagaggaaaccagggacaagatgggatacctgga
cctcccggagagaaaggagccatgggagctcctggaattggaccacggggcacagaggga
aagcaaggtccacctgggtgttctggagagaagggccctcctggtccctgtggccctcct
ggtccctgtggtcctgggggaaacccaggttgtcccggtcctcctggaccccctggtcct
cctggttttcctggcagggagggaatctgcactgaaggaggcaaaggagataacggaatg
cccggaggacgaggactaacaggtccccctggctgtaagggtcctcctggacctccaggt
cctggtaataaaggagagaagggatataaaggagcaacaggtgactcaggaccacctggc
tgccctggcgaccctggtccacaaggcaagctgggtgtagacggaccccggggcacagct
ggacaaaaaggcctgaccggagaaactggtgacacaggacctgtcggtttgaagggagat
gagggaccacggggtaacaccggctcacgaggacctccaggaccacctgggaggagagga
ccgagggggacggatgcatccagggcggtgaacctgataccaggagacaaaggcttggtt
ggacatcagggacccccaggacaaagaggacccccaggggtccatgggagacccgggtat
ccaggttttaagggcatagaagggcagcctggtgaaagaggaccagaaggtcgccctgga
ttgaaaggggatgagggagaccgaggattccctggacaaaaaggtattgcaggtccgcat
ggtccagttggtgctaaaggtattccaggtctacctggtcccaccgtggattcaccagag
aaggatggcttcctgttcaccagacacagtcaaaacctctttgtcccaagatgccctgca
ggatccagtgaagtgtacagcggatactcactgctgtttatcaacggaaacaaccgagct
catggacaagacctgggtacattgggtagttgtctccctctctttaccaccatgcccttc
ctgttctgcaacaccgacagcacctgtcgctacgcctcgcgcaatgactactcctattgg
ctgtccactaacgaaacactgccgggcagcgtccccttcatctctgggcaactgctggag
agctacatcagccggtgtactgtttgtgaggccagagccaacgtgatcgccattcacagt
cagaccagtttcatccccgactgtccctctgagtgggaccgtctctggttcggatactcc
ttcgtgatggaaacaggagtgggggcggaggggtcgggtcagcctctggcctcacctgga
tcctgtctggaatacttcaggaagattcccttcatcgagtgtcatggcagaggaacctgc
aactactataccgactcctacagctactggctggctgctctcaaccccagcgacatgttc
agcaaaccgaagcctcggaccgataccagagagtttccaggcagcctgatcagccgctgt
caagtctgtatgaagaggctgtga
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integrated database retrieval system
