KEGG   Xiphias gladius (swordfish): 120792259
Entry
120792259         CDS       T07311                                 
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl04510  Focal adhesion
xgl04512  ECM-receptor interaction
xgl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120792259 (col4a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120792259 (col4a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120792259 (col4a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xgl04147]
    120792259 (col4a3)
   00536 Glycosaminoglycan binding proteins [BR:xgl00536]
    120792259 (col4a3)
Exosome [BR:xgl04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   120792259 (col4a3)
Glycosaminoglycan binding proteins [BR:xgl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   120792259 (col4a3)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 120792259
NCBI-ProteinID: XP_039987265
LinkDB
Position
LG7:complement(27215200..27257470)
AA seq 1687 aa
MEAPGGPRRRLFPLLVLLLCCCSSASGHAEREAFSTSTLTPSRIGTMLERVCHCSGKSLC
HCDGVKGQKGEPGFHGEDGLPGMIGYPGNEGHQGSAGEKGDHGAAGIPGLKGARGLPGKP
GFPGPPGLPGLPGHEGQIGRPGFPGCNGTKGDVGYPGFPGVPGPAGFQGPSGLPGTKGET
RVYPVSQPTRGQTGPQGPEGQKGLRGDPGQLGFPGPPGPAGLPGRPGFLGLLGEKGQEGL
SPVIPGPRGQKGDRGPPGIPGQKGIKLYAEGPKELKGEPGEGGEKGCRGLSGLPGKPGVK
GEKGEQGDEGSLGKQGKDGLTGELGYQGDPGARGYLGPPGIEGATGERGERGPPGLPGET
VFNRRFLKGQRGLPGPRGPPGGPGEQGLIGFPGLQGDPGVALPGPPGPQGPPGFIGPKGE
PGEPGPLIVGPPGQIGIPGGPGAEGEPGEPGIPDFLQGDVGPPGAKGPRGLMGHPGPRGQ
DGPPGEKGEKCFVCPLVSLTPGPPGKPGEPGENGVTGPDGFPGPKGYKGVKGIRGPPGPQ
GPFGIPGIPGPVGPVGNPGVMQRVGQKGEEGTRGVPGPAGLEGTDGPQGAPGPKGVLGQR
GNPGPPGLKGDRGLLGERGPRGLIGQRGPPGPPGIGAPGPPGPQGSAGVLGQRGIAGKPG
EKGSPGEIKTYPGDPGQKGEKGLSGNPGPEGVTGPPGYQGFVGPKGEKGDKGFSVQGPPG
FPGVKGHKGLPGAPGLSSFGIKGRAGPSGPPGMPGPKGEGGIGFPGQQGQSGPQGEDGSV
GPQGNPGPQGADGGPGPTGQDGPPGPNGRSGLDGVPGPVGTVGICLEGAPGPKGEEGQMG
VIGFTGARGSKGVQGDPGLPGIGALGRQGPYGAPGFDGPAGPVGDVGLKGLRGTNGEPGS
PGIRGDMGPPGLGGNPGDDGKPGETGRQGPKGQMGVDGVRGSQGPPGPQGDQGETGPRGT
HTSVEVYGDPGDPGDIGPIGLSGLKGERGFLGPQGSDGSNGIPGNTGPRGFPGDPGRDGQ
KGSSGPYGLPGNPGEMGKPGFKGEKGCAGPCGIPGSDGKPGSAGPKGVKGEPSPPGPGSK
GCPGDKGNPGCPGYSGGKGKPGDTGIFGSPGDCGPCGPKGQAGPLGCRGPPGSPGEKGFD
GPTGINGPPGPTGLPGNKGAPGDPGPAGPRGNQGQDGIPGPPGEKGAMGAPGIGPRGTEG
KQGPPGCSGEKGPPGPCGPPGPCGPGGNPGCPGPPGPPGPPGFPGREGICTEGGKGDNGM
PGGRGLTGPPGCKGPPGPPGPGNKGEKGYKGATGDSGPPGCPGDPGPQGKLGVDGPRGTA
GQKGLTGETGDTGPVGLKGDEGPRGNTGSRGPPGPPGRRGPRGTDASRAVNLIPGDKGLV
GHQGPPGQRGPPGVHGRPGYPGFKGIEGQPGERGPEGRPGLKGDEGDRGFPGQKGIAGPH
GPVGAKGIPGLPGPTVDSPEKDGFLFTRHSQNLFVPRCPAGSSEVYSGYSLLFINGNNRA
HGQDLGTLGSCLPLFTTMPFLFCNTDSTCRYASRNDYSYWLSTNETLPGSVPFISGQLLE
SYISRCTVCEARANVIAIHSQTSFIPDCPSEWDRLWFGYSFVMETGVGAEGSGQPLASPG
SCLEYFRKIPFIECHGRGTCNYYTDSYSYWLAALNPSDMFSKPKPRTDTREFPGSLISRC
QVCMKRL
NT seq 5064 nt   +upstreamnt  +downstreamnt
atggaggctccgggcggcccgaggcggaggctcttcccgctgctggttctgctgctctgc
tgctgctcctccgcttcggggcacgccgagagggaggcgttctccacctccacactgacg
ccgtcacgcatcggtacgatgctggaacgggtgtgtcactgcagcgggaagtcgttgtgt
cactgtgacggggtaaaaggtcaaaagggtgaacctggtttccatggggaggatggtctt
cctggaatgattggttaccctggaaacgagggtcaccaggggtcagcaggagagaagggt
gatcacggagcagcaggaatacctggactgaaaggcgctcggggtcttccagggaaacca
ggtttcccaggacctccaggattgccgggacttcctggacatgaaggacaaattggccga
ccaggattcccaggatgcaatgggacaaagggggatgttgggtacccaggattccctggg
gttccaggacctgctggctttcaaggtccttcaggactgccaggtacaaagggagaaaca
cgtgtctaccccgtctctcagcctactagaggacaaactggaccacaaggaccagaggga
caaaaggggctgaggggagatccaggtcagcttggcttcccgggaccaccaggacctgct
ggactacctggaagaccaggttttctggggttactgggagagaagggtcaggagggtctc
agtccagtgatcccaggtccccgaggacagaagggtgatcgtggacctccagggattccc
ggccagaaagggatcaaactgtacgccgaaggacccaaagaactgaagggagaaccaggt
gaaggtggtgagaaaggttgtcgtggactttctggtttgccggggaaaccgggggtgaaa
ggagagaagggtgagcaaggcgacgagggctcactgggtaaacagggaaaagatggactc
accggggagctcggatatcagggagacccaggggcacgtgggtacctcggcccgccaggt
attgaaggagccacgggggagagaggggaacgtggtcctccgggtcttccaggagagacg
gtcttcaatcgaagattcctgaagggccagcgtggtctccccgggccccgcggaccccca
ggaggccctggagaacaaggactcattggttttcctggactgcagggcgatccaggtgta
gctctgcctgggccaccaggcccccaggggccacctggttttattggacccaaaggagaa
ccaggagagccagggcccctcatcgtcgggcccccaggacagattggaatcccaggaggt
ccaggggccgaaggagaaccgggagaaccagggataccagatttcctgcagggagatgtt
ggtcctccaggagctaaaggtccaagaggcctgatgggacatcctgggcccagagggcag
gatggaccaccgggtgagaagggtgagaagtgcttcgtctgtcctcttgtttccctcacc
cccggacctccaggtaaaccaggagagccaggtgaaaatggggtgacaggtccagacggt
tttccaggacccaaaggttacaaaggggtcaaaggtatcagaggaccacctggtccacag
ggcccctttggtatccccggcatcccggggcccgtgggacctgtgggtaacccgggggtc
atgcaaagggtggggcagaagggtgaggaagggacccggggggttccaggacctgcgggt
cttgaggggacagacggacctcaaggagctccaggaccgaaaggtgttctgggacagaga
ggaaaccctgggcctccgggactgaaaggggacaggggcctgctaggggagagaggtccc
agaggattgataggacagcggggacctccaggacctcctggtattggtgctccaggacct
ccaggacctcaaggcagcgcaggagtcctgggacagcgaggaattgctggaaaaccaggt
gaaaagggttctccaggtgaaatcaaaacatatccaggagatcccggacagaaaggagag
aaaggtttatctggaaaccctggacctgaaggtgtgacaggacctccaggttatcaagga
tttgttggtccaaagggagaaaaaggagataaaggattttctgtgcaggggcccccaggc
ttcccaggggtaaaaggacataagggccttccaggagctccaggtctatcaagttttggc
atcaagggacgagcggggccatcgggcccaccggggatgccgggcccaaagggggaaggg
ggtatcggtttcccaggccagcagggtcagtcaggccctcagggagaagatggctctgtg
gggccccaaggaaaccccggaccccagggggcagatggaggtccagggcctacaggacaa
gacggaccaccaggacccaatggtcggagtggtctggatggtgtacccggtcctgttggt
actgttggaatctgtttagagggagctcctggacctaaaggagaggagggacagatgggc
gtcatcggattcacaggggcccggggctcaaagggagtgcagggtgaccctgggttgccg
ggtatcggagctctgggacgccaagggccatacggcgccccagggtttgatggacctgca
gggcctgtaggagatgttggactgaaaggcctcagagggaccaatggggagccagggagc
ccaggtatcagaggggacatgggtcctccaggacttggtggaaatccaggggatgatggg
aaaccaggagagacaggacgacaaggaccaaaaggtcagatgggagtagatggggtcagg
ggttctcaggggcctccagggcctcaaggggaccaaggggagaccggacctagaggaacc
catacttctgttgaggtgtacggagatcctggagaccctggagacattggacccataggt
ctctctggtcttaaaggagagaggggcttcctgggaccccagggctctgacggcagcaac
ggtatacctggaaacaccggaccacgaggatttcctggagaccccggcagagatgggcag
aaaggttcttctggaccctatggtctccctggtaacccaggagagatgggaaagccaggt
tttaaaggtgagaaaggttgtgcaggcccttgtgggatacctggctcagatgggaaacca
ggatcagccggacctaaaggtgttaaaggagaacctagtccacctggaccaggatctaaa
ggatgtccaggagataaggggaatccaggctgtccaggatattcaggtggaaaggggaaa
ccgggagacactgggatctttggttctccaggagactgtggcccctgtggccccaaagga
caagctgggccccttggatgcagaggtcctcctggatctcctggtgaaaagggttttgat
ggtcctacggggataaatggcccacctggacccacaggtctcccaggtaacaagggggct
cctggagatcctggtccagccggtcccagaggaaaccagggacaagatgggatacctgga
cctcccggagagaaaggagccatgggagctcctggaattggaccacggggcacagaggga
aagcaaggtccacctgggtgttctggagagaagggccctcctggtccctgtggccctcct
ggtccctgtggtcctgggggaaacccaggttgtcccggtcctcctggaccccctggtcct
cctggttttcctggcagggagggaatctgcactgaaggaggcaaaggagataacggaatg
cccggaggacgaggactaacaggtccccctggctgtaagggtcctcctggacctccaggt
cctggtaataaaggagagaagggatataaaggagcaacaggtgactcaggaccacctggc
tgccctggcgaccctggtccacaaggcaagctgggtgtagacggaccccggggcacagct
ggacaaaaaggcctgaccggagaaactggtgacacaggacctgtcggtttgaagggagat
gagggaccacggggtaacaccggctcacgaggacctccaggaccacctgggaggagagga
ccgagggggacggatgcatccagggcggtgaacctgataccaggagacaaaggcttggtt
ggacatcagggacccccaggacaaagaggacccccaggggtccatgggagacccgggtat
ccaggttttaagggcatagaagggcagcctggtgaaagaggaccagaaggtcgccctgga
ttgaaaggggatgagggagaccgaggattccctggacaaaaaggtattgcaggtccgcat
ggtccagttggtgctaaaggtattccaggtctacctggtcccaccgtggattcaccagag
aaggatggcttcctgttcaccagacacagtcaaaacctctttgtcccaagatgccctgca
ggatccagtgaagtgtacagcggatactcactgctgtttatcaacggaaacaaccgagct
catggacaagacctgggtacattgggtagttgtctccctctctttaccaccatgcccttc
ctgttctgcaacaccgacagcacctgtcgctacgcctcgcgcaatgactactcctattgg
ctgtccactaacgaaacactgccgggcagcgtccccttcatctctgggcaactgctggag
agctacatcagccggtgtactgtttgtgaggccagagccaacgtgatcgccattcacagt
cagaccagtttcatccccgactgtccctctgagtgggaccgtctctggttcggatactcc
ttcgtgatggaaacaggagtgggggcggaggggtcgggtcagcctctggcctcacctgga
tcctgtctggaatacttcaggaagattcccttcatcgagtgtcatggcagaggaacctgc
aactactataccgactcctacagctactggctggctgctctcaaccccagcgacatgttc
agcaaaccgaagcctcggaccgataccagagagtttccaggcagcctgatcagccgctgt
caagtctgtatgaagaggctgtga

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