Xiphias gladius (swordfish): 120792983
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Entry
120792983 CDS
T07311
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120792983 (ctcf)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120792983 (ctcf)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120792983 (ctcf)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120792983 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451
zf-met
zf-C2HE
zf-C2H2_6
zf-C2H2_15
zf-WIZ
zf-C2H2_ZN142
Motif
Other DBs
NCBI-GeneID:
120792983
NCBI-ProteinID:
XP_039988389
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Position
LG8:complement(1479983..1496758)
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AA seq
874 aa
AA seq
DB search
MQTAAQCTEIVKTVDLSWLFQLLPSMDGGQTERVGVVEVPAKDFPSIQAVHSQDAMVADL
LQQAAEAGGVVEGQAGVVLEQGHGEGMVTATQAQQQLLEAGVGVGVEGGAGVEMMVMDSL
DPTLLQMKTEVIDAAVGGSSAAVGVVGGVAGAAHQATVTTVDQTQIITLQVVNMEEQAAL
GLGELQLVQVPVSATTVEALQQGTFVDTTAMPKDGDPVICHTLPLPEGFQVVKVGANGEV
ETVEQEEEGGEAHPEEEEDDEVGNQLLEEGEDEPIQPPNDDPNWAKDPDYQPPSGAVKKT
KKGKKSRLRYAEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKK
TFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKC
TDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLC
SYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT
VIARKSDLGVHLRKQHSFIETGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDMCDYCC
RQERHMVMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFKRYHDPTFIPTVFICPKCSKTF
TRRNTMARHADNCSGEVEDAENGAPTPKKGRRGRKRKMRSRRDEDDSEEDHAEPEEEEEE
EEEEGEGEEESSLLQEEEEPETMELDQAPAAIPVPAPDEPPVKRKRGRPPKNAPKPPTSS
KSVRVASKTTASAAAIIQVEDESTGAVENIIVKKEEGDASAATPLEQGVALTVEGVGLDG
EGVETVELAVNEETAAAAANGDLTPEMILSMMDR
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgcagactgcagcccagtgtacagaaatcgtgaaaacagttgatttatcctggctattc
cagttactacccagcatggacggcgggcaaacagagcgtgtaggggtagtggaggtcccc
gccaaagacttcccctccatccaggccgttcacagccaggatgccatggttgctgacctc
ctccagcaagctgcagaggccgggggtgtagtagagggacaagctggagtcgtcctcgaa
caaggtcatggggaaggaatggtaacagccacccaggcccagcagcagctactggaagct
ggggtcggggttggtgtagaaggcggagcaggggttgaaatgatggttatggactcactc
gatcccaccctgttgcagatgaagactgaggtgatagatgctgcagtagggggatcatca
gcagcagtgggtgttgttggaggggtagctggagccgctcaccaagcaactgtaacaaca
gtggaccagactcaaataattacactacaggtggtgaacatggaggagcaggcagccttg
ggcttgggggagctccagctggttcaggtgcctgtttctgccacaactgtggaggccttg
cagcaaggcacctttgtagacaccactgcaatgccaaaggacggagacccggtcatctgc
cacaccctgccacttcccgagggctttcaagtagttaaggttggtgctaatggggaggtg
gagacagtggagcaggaggaggagggaggagaagcccaccctgaagaggaggaagatgat
gaagtggggaaccagctgctggaagaaggggaggatgagcccattcagcctccaaatgac
gacccaaactgggctaaagacccagactatcagccgccatctggagcagtcaaaaagacc
aaaaagggtaaaaagagtcgcctgcgttatgcggaaggagataaggacatggatgtcagt
gtgtatgactttgaagaagaacaacaggagggccttctgtctgaggtcaacgctgagaaa
gtggtgggcaacatgaaaccacccaaacccacaaagatcaagaaaaaaggagtgaagaag
acatttcagtgtgaactgtgtagctacacctgccctcgacgctccaacctggacagacac
atgaagagccacaccgacgagagacctcacaaatgtcacttgtgtggaagagccttcagg
acggtcaccttgctaagaaaccatctcaacacacacaccggaactcgtccccacaagtgc
acagactgtgatatggcttttgtgactagcggagagctggttcgtcatcgtcgttacaaa
cacacacatgagaaacccttcaaatgttccatgtgcgactatgccagtgtggaggtgagc
aaactaaagcgtcacattcgttcccacaccggcgagcgtccattccagtgcagtctctgt
agctacgccagcagagacacatacaagctgaagagacacatgaggacacactcaggagag
aaaccttatgagtgctacatctgccacgctcgatttacccagagtggaaccatgaagatg
cacattctgcagaaacacacagagaatgttgccaaattccactgtccacactgtgacact
gtcatcgcacgcaagagtgacttgggggtccaccttcgtaaacagcactcatttattgag
actggaaagaagtgtcgttactgcgacgctgttttccatgagcgctacgctctgatccag
catcagaaatcccataagaatgagaaaaggttcaaatgcgacatgtgtgactactgctgc
cgccaggagcgccacatggtgatgcatcgtcgaacccacaccggagagaaaccatatgcc
tgcagccagtgtgagaagaccttcagacagaagcagctgctggacatgcacttcaaacgt
taccacgaccccacctttatccccactgttttcatctgccccaagtgtagcaagaccttc
actcgcaggaacaccatggcacgccatgctgacaactgtagcggtgaggtggaggatgcc
gagaatggagctccaaccccaaagaaagggagaagaggaagaaagaggaaaatgaggagc
agaagagatgaggatgacagtgaggaggatcacgctgaacctgaagaggaggaggaggag
gaggaggaggagggtgagggtgaggaggaatcatcactgctacaggaagaggaggagcca
gaaaccatggaactggaccaggcccctgccgccatccctgtgccggcccccgacgaacca
ccagtcaagaggaaacgaggccgacccccgaagaatgcccctaagcctcctacatccagc
aagtcagtcagggtggcttccaagacaactgcttctgctgctgccatcattcaggtggag
gatgagagcaccggagcagtggagaacatcatagtgaagaaggaggagggcgacgcctct
gctgcgacgcctctggagcagggagtggccctgaccgtggagggcgtggggctagatggg
gaaggggtggagactgttgagctggctgtgaatgaggaaacagcagctgctgctgccaac
ggagatctgacaccagagatgatcctcagcatgatggaccggtga
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