Xiphias gladius (swordfish): 120793355
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Entry
120793355 CDS
T07311
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120793355 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120793355 (sf3b3)
03041 Spliceosome [BR:
xgl03041
]
120793355 (sf3b3)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120793355 (sf3b3)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120793355 (sf3b3)
Spliceosome [BR:
xgl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120793355 (sf3b3)
Complex B
120793355 (sf3b3)
Complex C
U2 SnRNP specific factors
120793355 (sf3b3)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120793355 (sf3b3)
TFTC complex
120793355 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
120793355
NCBI-ProteinID:
XP_039989287
LinkDB
All DBs
Position
LG8:7016095..7046608
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQCTPRKFVIHPESNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLVNPIQGSTLDQVQLEQNEAAFSVAVCRFTNTG
DDWYVLVGVGRDMILNPRSVTGGFIYTYRLIGGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHIPNLVTSIHTIGQRVIVTDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacctcaccctgcagcgtgccactggcatcacccatgccatccatgga
aacttctcaggaaccaagatgcaggagatagttgtttccaggggaaagatcttggaatta
ttgcggccagatgccaacacaggaaaggtgcacactctgctcacagtggaggtttttggc
atcataaggtccctgatggcattcagactcactggaggaacaaaagattacattgttgtg
ggaagtgacagtggtcgtattgtcatcctggaatatcatccatcaaaaaacatgtttgag
aagatccaccaagaaacgtttgggaagagcggctgccggcgcattgttcccggacagttc
ctggctgtcgacccaaaaggcagagctgttatgataggagcgatcgagaaacagaagctg
gtttatattctaaacagagatgcagctgcgagattgaccatatcctctcctctggaagcc
cataaagcaaacacactggtgtaccatgtagtcggtgtcgatgttggctttgaaaatcca
atgtttgcctgcttagaaatggactatgaggaagctgacaatgacccaacaggagaagct
gccgccaacacgcaacagacgctcaccttttacgagctggaccttggcttgaatcacgtg
gttcgcaagtacagcgaggctttggaagagcatggaaatttcctcatcactgtccctggt
ggttcagatgggcccagtggagttctgatctgctccgaaaactacatcacttacaagaat
tttggagaccagcccgacattcgctgtcccatcccgcgacgtaggaatgacctggatgac
ccagagcgtggcatgatatttgtctgctcagccacccacaagaccaagtcaatgttcttc
tttctggcccagactgagcagggagacatctttaaggttactctggaaacagatgaagaa
atggtcacagaaatcaggctgaagtactttgacacgatccctgtggcagcagccatgtgt
gttctgaagactggcttcctgtttgtggcttcagagtttggaaaccattacctttaccag
atagctcacttgggtgatgatgatgatgagcctgagttctcatctgcaatgccattggaa
gagggagacaccttcttcttccagcctcgccccctcaaaaacctagtgctggtggacgaa
caggagaacttatcacccatcatgtcctgtcagatagctgatttggccaatgaagacaca
cctcaactgtatgtggcctgtggacgaggacccaggtccactctaagggtccttcggcat
ggactggaggtttcagagatggctgtgtctgagctgcccggtaaccccaatgctgtgtgg
acagtacgcagacatgtggaagacgagtttgatgcctacatcattgtatctttcgtcaac
gctactctggttctgtccatcggggagactgtagaagaagtgacagattctggatttctg
ggaacaacgcccactctctcctgctcactgcttggtgaagatgccttggtgcaggtgtac
ccagacggcatccgccatatccgagcagacaagcgtgtgaatgagtggaagactcctggt
aaaaaaacgattgtccgctgtgctgtgaaccaaaggcaggtggttatcgccctcactgga
ggcgagcttgtctactttgagatggacccgtctggccagctgaatgagtacacagagagg
aaagagatgtctgcagatgtggtttgcatgagcctggctaacgttccacctggtgagcag
cgctctcgattcctggctgttggactggttgacaacactgtccgaatcatctccctggac
ccttcggactgcctacagccgctgagtatgcaggccctaccagcccagccagagagtctg
tgcattgtggagatgggaggggttgagaaacaggatgaacttggagaaaagggaaccatc
ggattcctctacctcaacataggacttcagaatggtgtgctgctgaggactgttttggac
ccagtaaccggtgacctgtcagatacaagaacacgctacctggggtcacgacctgtcaaa
ctcttcagagtcaggatgcagggccaggaagctgtgttggcaatgtccagtcgctcctgg
ctcagctactcataccagtcccgcttccatctgacccctctgtcatatgagactctggag
tatgcctctggctttgcctctgaacaatgcccagaaggcatagtggccatctccactaac
acactgagaatcttggctttggagaagttaggagccgtcttcaaccaggtggcctttcct
ctgcagtgcactcccaggaaatttgtgatccacccagagagcaacaacctaattttgatt
gaaactgaccacaatgcctacacggaggcaaccaaagctcagcggaagcaacagatggct
gaggagatggtggaggctgctggtgaggatgaaagagaactggctgctgagatggctgct
gccttcctcaacgagaatcttccagaagccatctttggtgcacctaaagctggagccggg
cagtgggcctcacttgtgcgactggtcaaccccatacagggttcaacactggaccaggtg
cagctggaacagaatgaagctgcattcagtgttgcagtgtgtcgtttcaccaacacagga
gatgattggtatgttctggtcggggttggcagagacatgattctcaaccccagatcggtg
actggtggctttatctacacctataggctcattggtggaggggagaagctggagtttgtg
cacaagacccccgtagaggacgtgcctttggccattgctccatttcagggacgagtcctg
gtgggagttgggaaactgcttagaatctacgacctgggaaaaaagaagctgcttcgaaag
tgtgaaaacaagcacatacccaacctggtgactagcatccataccatcggccagcgtgtg
atcgtgactgacgtccaggagagtctgttctgggttcgttaccgacgtaacgagaaccag
ctcatcatctttgctgacgacacttatcctcgctgggtgacgacggcctgtctacttgac
tatgacaccatggcctctgctgacaagtttgggaacatcagcattgtgcgtcttcccccc
aacactagtgatgacgtagatgaagaccccacggggaacaaagctttatgggacagaggc
ctccttaatggagcatcacagaaggctgaggtgatagtgaactaccacgtaggagagaca
gtgttgtctctccagaaaaccactctgattcccggaggttcagagtccctggtctacacc
acgctatctggaggcattggcatactggtcccattcacctcacatgaggatcatgacttt
ttccagcatttagagatgcacatgcgctctgagttccctccactatgcggtagagaccat
ctcagctttagatcctactatttcccagttaagaatgtgatcgatggagatctgtgtgag
cagtttaacagtatggaccctcacaagcagaagagtgtggcagaagagcttgacagaacg
ccaccagaagtctctaagaaactggaggatattcgcactcgctacgccttctaa
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integrated database retrieval system
