Xiphias gladius (swordfish): 120793359
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Entry
120793359 CDS
T07311
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120793359 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120793359 (cnot4a)
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120793359 (cnot4a)
04121 Ubiquitin system [BR:
xgl04121
]
120793359 (cnot4a)
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120793359 (cnot4a)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120793359 (cnot4a)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120793359 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120793359 (cnot4a)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120793359 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Med7
DZR_2
Nup35_RRM_2
RDD1
zf-CCCH_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
120793359
NCBI-ProteinID:
XP_039989296
LinkDB
All DBs
Position
LG8:complement(21427867..21437521)
Genome browser
AA seq
803 aa
AA seq
DB search
MSHSPEMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGAEKSKSKSSSTQRTNNSNGKDGWPTLSGHNKLANGLSEDRKS
PPLLDYLDQEVITSDGLDTELAPGQRTALSPFSSNCDSNSPSDKPPESIGMVNGETLQQI
PTSDSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLP
PFPNSPRGSSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVT
RKALADLIEKELSVQDQSPLSPGHLPQGSNHGPSLLPPNPSAASHHFPSSLPRLPQLHHR
AIYSSFSFPGSQNSQASQQQQPAARHPWMGVPTRNNLTHLNHSASAASHSNFLDLNLPHQ
HNTGLGGIPISGIRHLENSGSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSS
NSVNHIGGPVGPAGISHSLSWDGTASWMDPAIITGIPASAGSSLDCLQDDNPPHWLKSLQ
ALTEMDGPVSSAVPTPQPLHSGLLDAHLPLHHRATGGWAPYLPPPTANPASQFHSPPPGF
QTAFRPPGQPATELLQSAAVDRH
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgaaatgaaggacgaccccatggagtgccctctgtgcatggagccg
ctggagattgatgacgtcaacttcttcccttgcacctgtggctaccagatctgccgcttc
tgttggcatcgcatccgcacagacgagaacggcctctgccccgcctgcagaaagccgtac
ccagaggacccggctgtgtacaagcctctgtcacaggaggagatccagaggataaagaat
gaaaagaagcagaaacagaacgagaagaagcagaaggtgacagaaaaccgcaagcatctg
gccagtgtcagagtggtccagagaaatctggtgtttgtggtgggactctcgcagcgactc
gccgacccggaggtccttaaacgaccagagtattttgggaggtttgggaaaatccataaa
gtggtcatcaacaatagcacatcttatgcaggttcacagggacctagtgctagtgcttat
gtcacttacattcgctctgaagatgctctaagagcaatacaatgtgtgaacaatgtggtt
gttgatggcaggacactcaaggcttctttaggcacaacaaagtactgcagttacttcctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacatgagctgggggatgaagca
gctagctttactaaagaggagatgcaggcgggaaaacatcaagagtatgagcagaaactc
ctccaagacctttataaaattaaccctagctttctacaacctccagcctgtggtgcagag
aagtcaaagagtaaatcaagctccacacagagaaccaacaatagcaatggtaaagatggg
tggccgacgctgtcagggcataacaaactagccaacgggctttcagaggaccgcaagtct
cctccgctgctagactatctagaccaagaagttattacttctgatgggctagatacagag
ctggctcctggtcagcgcactgccctgtcccctttctcctctaactgtgacagtaacagt
cccagtgacaaacctccagaatcaattggtatggtgaatggagagactttacaacagata
cccaccagtgactccccctcccctcccccgggtttaactaagcccagcctggtggtgccc
atcagcgtgtcagacctcacagcccgttcgccctttgagggtgcggcagctgagtcccag
tcgctcttttcagacaacagtaacttcagacatcctaaccctctccctgctggcctgccc
cccttccccaactccccacgcggcagctctgactggcccatgacccctgaaccacagagc
ctcttcacatcagacacaataccagtgtcttcttccacagactggcaggcggcctttggc
tttggctcgtccagcaaacagcaggacgatgacctgggcttcgatcctttcgacgtcacc
cgcaaggctttggccgacctgatagagaaggagctttcggtgcaggatcagagtcccttg
tccccagggcacctcccccaagggagcaatcacggtcccagcctgctgccccccaatcca
agcgccgcctctcaccacttccccagcagcctgccacgcctcccccagctccaccacaga
gccatctacagctccttcagtttccccggcagtcagaacagccaggccagtcagcagcag
cagccagccgccagacatccctggatgggcgtccccacacgaaataacctcacacacttg
aaccactcagccagtgctgcctcacacagtaatttcctggacctgaatctgccccatcag
cacaacacagggctgggagggatccccatctcaggtatcagacacctggaaaacagtggc
tctatagacggcttaaatgtgaaagagtggcaggatggcctgagagctctcctgcccaat
atcaatatcaacttcgggggtctcccaaattcctcttcctcttcatcctcctcatcctcc
aacagtgttaatcacatcggtgggccggtggggccagcaggcatctcacacagcctgagc
tgggacggcacagccagttggatggaccctgctatcatcacaggcatcccagcctcggca
ggcagcagtttagactgtctccaggacgacaacccaccacactggctcaagtccctgcag
gcgctcacagagatggatggcccggtcagttcagcggtgcccactccccagcccctccac
agcggcctcctcgacgcccacctccccctccaccacagagccactggcggctgggctccc
tacctgcccccacccacagccaaccctgccagccagttccactcccctcccccaggcttc
cagaccgccttcagacccccgggacagcccgccacagagctgctacagagtgccgctgtg
gaccgccactga
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