Xiphias gladius (swordfish): 120794154
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Entry
120794154 CDS
T07311
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03430
Mismatch repair
xgl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120794154 (pms2)
03460 Fanconi anemia pathway
120794154 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120794154 (pms2)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120794154 (pms2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120794154
NCBI-ProteinID:
XP_039990833
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Position
LG9:15282677..15289826
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AA seq
867 aa
AA seq
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MSDACSSEPAGAIKAIDRHSVHQICSGQVVLSLATAVKELVENSIDAGATNIDVKLKECG
AELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSV
VTCHESNQVGTKLVFDHKGHMVQQSPHPRQQGTTVSLQQLFYTLPVRHKEFQRNIKKEYT
KMIHVLQSYCIISTGVRITCSNQNGQGKRSTVLSTSGSQSMRDNIGAIFGPKQLQSLLPF
QQVSPTENIIEEYGLKDADLPKQLFTITGFVSRGDHGVGRSATDRQFFFINNRPCDPLKV
TKLVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQIFLQEEKLLMAILKTSLVSM
YEAGVNKISLNYTPMPSSIAASASELCQASPSNENMPEPVEAVEPVIQSPKSSLNLASLK
AAFSSHHSANSGNKSSMSKAANSVPTQKILHTFFKGPLKPPASNPSVKSPLKPAKGLAEC
SPVGKSVLDGFRYGRMSSMDTSHEKDSAVSSFVSTTVAPDSQCSGLELSSLEPVIERPSV
KDETFEETPDNTPTVHEDPGPQTAPCTSNEDDTLSPDAKRARKENPDFPTEHKSDTFLNC
SEGSSFSIVDAPVCLRRRTVPLQFSLQELEGKIRRIQDQQKQKAGEELCYRRFRAKINPG
ENQSAEEELKKEICKDMFKEMEIIGQFNLGFIITKLNSDIFMIDQHATDEKYNFEMLQQH
TVLQGQKLIAPQKLHLTAVSENVLLENIEIFRKNGFEFLVEEDAQVMERVKLVSLPTSKN
WTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALSVSEMRKLVVHMG
EIEQPWNCPHGRPTMRHLANLDLISQD
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcctgtagctctgaacctgcaggagccatcaaggccattgacaggcactcg
gtgcatcaaatctgctcaggacaggtggtgctgagtttggccacggctgtcaaagagctg
gtggaaaacagcattgatgcaggagccaccaacattgatgtgaagctgaaggagtgtgga
gctgaactagtggaagtgtcagacaatggcaaaggtgtagaggaggccaactttgaagga
ctcacactgaagcatcacacgtcaaagctaagggatttctctgatcttatccacgtggaa
acctttggcttcagaggtgaagccctcagctctttatgtgctctgagtgacctgagtgtg
gtgacatgccatgagtccaatcaggtgggaaccaagctggtgtttgaccacaaaggccac
atggtgcagcagtcaccccatccccgtcagcaaggcaccaccgtcagcctgcagcagctc
ttctacacactgcctgttcgacacaaggagttccaacgcaatattaagaaggagtatacc
aaaatgatacatgtcctgcagtcgtactgtatcatttctacaggagtgcgtattacctgc
tccaaccaaaacgggcaggggaagcgcagcacagtgctgagcaccagcggtagccagagt
atgagagacaatataggagccatatttggaccaaaacagctacagagtcttctgcctttt
caacaagtatcccctacagaaaatattattgaagaatatggactcaaggatgcggatctt
cccaaacagcttttcaccatcacggggtttgtgtcaagaggggaccatggtgttgggaga
agcgccacagacaggcagttctttttcattaacaaccggccatgtgatcctcttaaggtg
accaaacttgtgaatgaagtgtatcacatgtataacagacaccagtatccatttgttgcc
ttgaacatagctgttgcctcggagtgtgtggatgtgaacgtaaccccagacaaacgacag
attttccttcaggaggagaaactcttgatggctattctaaagacctctctcgtcagcatg
tatgaggctggagtcaataagatcagcctgaactatacaccaatgcccagcagcattgca
gcatctgcatctgaactatgtcaagcttccccgtctaatgagaacatgccagaaccggta
gaggccgtggaaccagtgatacagagcccaaagtcatccttgaacctggccagcctaaaa
gctgctttttcaagtcatcacagcgccaattctgggaacaaatcaagcatgtcaaaagct
gccaacagtgtcccaacacagaaaatactgcatactttttttaagggccctcttaaacct
cctgcttccaacccaagtgttaaatctcctttgaaacctgcaaaaggtctagctgaatgc
tccccagtgggaaagtcggtattagatggatttagatacggaaggatgtcttctatggat
acaagccatgaaaaagacagtgctgtgtcgagtttcgtttccactacagtggctccagat
agtcagtgttctggcctcgagctcagttctcttgaaccggtgattgagagacccagtgtg
aaagatgaaacattcgaagaaacaccagacaatactccaaccgttcatgaagacccaggg
ccacagactgcgccatgcacttccaacgaggacgatactctgagccctgatgccaagagg
gccaggaaagagaatccagatttccctacagaacacaaatccgacactttcttaaactgt
tccgagggatcctctttctctatagtggatgctccggtctgcttacggaggaggacggtg
cctctccagttctctttacaagagcttgaagggaagataaggaggatacaggaccagcag
aaacaaaaggctggtgaggagctatgctacagacgcttcagggccaagatcaaccccgga
gaaaaccaaagtgcagaggaagagctgaagaaggagatctgtaaagacatgttcaaagag
atggagatcatcgggcagtttaacctgggcttcatcatcaccaaactcaactcagacatc
ttcatgattgaccaacacgccacagacgagaaatacaactttgagatgctgcagcagcac
actgtgctccaaggacagaaactcatagcccctcagaaacttcacctcactgcagtcagt
gagaatgtactcttagagaacattgagattttcaggaagaatggctttgaatttctggtt
gaggaggacgctcaggtgatggagagggttaagctggtatcgctgcccaccagtaaaaac
tggacattcggtccagctgatattgaggagctgatcttcatgttgagtgacagtccaggg
gtcatgtgccgaccatccagagtcagacagatgtttgcctccagagcttgtcggaaatct
gtgatgattggcaccgctctgagtgtcagtgagatgaggaagctggtggttcacatgggg
gaaattgagcaaccatggaactgtcctcacggcaggcccaccatgagacacctcgccaac
ctggacctcatctcacaagactga
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