Xiphias gladius (swordfish): 120794174
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Entry
120794174 CDS
T07311
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04518
Integrin signaling
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120794174 (col1a1b)
04518 Integrin signaling
120794174 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120794174 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120794174 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120794174 (col1a1b)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120794174 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
120794174
NCBI-ProteinID:
XP_039990881
LinkDB
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Position
LG9
Genome browser
AA seq
1449 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLLARAQGEDDSTFGSCTLNGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSECADPIIPEGECCPICPDDGPQVPDVFEPTKGDVGPKGDRGPAGPPGN
DGIPGQPGLPGPPGPPGPPGLGGNFSPQMSYMDSSKSSGPSVPGPIGPMGPRGPAGPPGS
SGPQGFTGPPGEPGEPGASGSMGPRGPVGPPGKNGDDGEPGKAGRPGERGAAGPQGARGF
PGTPGLPGIKGHRGFSGLDGAKGQTGPAGPKGEPGSPGENGLPGIMGARGLPGERGHPGA
PGPAGARGNDGNTGPAGPPGPTGPAGSPGFLGGAGPKGETGATGARGADGPQGARGEPGN
PGPAGAAGPAGAPGTDGAPGAKGNSGAAGITGAPGFPGTRGPAGAQGAVGAPGPKGNNGD
VGPHGPKGEPGAKGEPGPAGIQGLPGPSGEEGKRGGRGEPGGAGPRGPPGERGAHGARGF
PGADGAVGGKGAPGERGAPGAMGSQGATGESGNPGTPGAPGSKGVTGSPGSPGADGKVGP
AGASGQDGRPGPPGSAGSRGQPGVMGFPGPKGLTGEPGKPGERGAVGASGPVGAPGKDGD
VGAPGPSGPAGPAGEKGEQGPVGSPGYQGLSGPQGATGETGKPGEQGAPGEAGPPGPAGG
RGDRGFPGERGATGITGPTGPRGAPGPAGSDGPKGETGAAGASGGLGAPGMQGMPGERGA
SGLPGVKGERGEPGGKGGDGAPGKDGVRGLTGAIGVPGPPGAQGEKGEGGPPGVTGPSGS
RGAPGERGETGPPGPAGFAGPPGADGQPGAKGESGDTGPKGDVGAPGPSGPLGGVGPQGP
AGPTGPKGARGGAGPPGATGYPGPAGRVGPPGPSGTAGPPGPIGPVGKDGARGSRGEPGP
AGRPGEAGAAGPPGPAGEKGSHGADGAPGPSGLPGPQGITGQRGGVGLTGQRGERGMPGV
SGASGEPGKQGSSGPVGERGPPGPAGPAGLSGAPGEAGREGSAGHDGAPGRDGPPGPKGD
RGETGLAGPHGPPGAPGAPGPLGAYGKAGSRGETGPAGPAGPSGPAGVRGPAGPAGAKGD
RGEAGEAGERGHKGHRGFTGMHGLPGPAGSVGERGPAGANGPAGPRGPAGSNGATGKDGM
NGLPGPIGPPGPRGRNGDMGPAGPPGPPGPAGPPGPPGNGYPFISPPAQEKAPDPYHGGH
WHDDDPNVVQDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLKMSHPEWKTGIYW
VDPNQGSSLDAIKVHCNMETGQTCIYPSESSIPMKNWYLSKNIREKKHVWFSESMTGGFQ
FQYGSDGADSEDVSIQMTFMRLMSNQASQNITYHCKNSIAYMDSATGNLKKALLLQGSND
VEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFG
VEVGPVCFL
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcagcagtgcttttggcg
agagctcaaggcgaggatgatagcacattcggcagctgcacattaaacggacagttgtac
aacgacaaggatgtatggaaaccagagccctgccagatctgcgtctgtgacagtggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatccgagtgcgccgatcccatcattcca
gagggagagtgctgccctatctgccccgatgatggaccccaggttccagatgtgtttgag
ccaacaaagggagacgttggccccaagggagacaggggtcctgctggtcctcctggcaac
gatggaatccccggacagcctggacttcctggcccacccggcccccctggcccccctggc
cttggcggaaacttctctcctcaaatgagctacatggactcctccaaatcctctggccca
tctgttcctggccccattggtcctatgggtcctcgtggtcctgctggaccccctggctcc
tctggtcctcagggtttcactggaccccctggagagcctggtgagcccggagcttctggt
tccatgggtcctcgtggtcccgttggcccccctggaaagaacggagatgatggtgagccc
ggcaaagctggacgtcccggtgagcgcggagctgctggccctcagggtgctcgtggattc
cccggaacacctggactccccggcatcaagggacacagaggtttcagcggtctggatgga
gctaagggacaaaccggacctgctggccctaagggagagcccggttcccctggtgagaac
ggtcttcctggaatcatgggtgctcgtggtcttcctggtgagagaggccaccctggagct
cctggccctgctggtgctcgtggtaatgatggcaacactggtcctgctggacctcctgga
cccactggacctgctggatcccctggattcctcggtggtgctggccctaagggagaaacc
ggtgccactggagcccgtggagctgacggaccccagggagcccgtggcgagcctggtaac
ccaggacccgctggagccgctggacctgctggtgctcccggaactgatggtgcccctggt
gctaagggtaattctggtgctgctggtattactggtgctcctggtttcccaggtactcgt
ggtcctgctggagctcagggagctgttggtgctcctggtcccaagggtaacaatggtgat
gttggtccccatggtcctaagggagagcctggtgccaagggagagcctggccccgcagga
attcagggacttcctggcccctctggtgaggagggaaagagaggaggtcgtggagagccc
ggtggtgctggaccccgtggaccccctggagagcgtggtgcccatggtgctcgcggtttc
cctggtgctgatggagctgttggtggcaagggagcccctggtgagcgtggtgcccctggc
gcaatgggatctcagggagccactggtgagtctggaaaccctggtactcctggcgcacct
ggatccaagggtgtgactggtagccctggaagccctggcgctgatggcaaagttggacct
gctggtgcttctggacaagatggccgccctggacctcctggctcagctggaagcagaggt
cagcctggagttatgggattccccggacccaagggacttactggtgagcctggtaagcct
ggtgagagaggcgctgttggtgcttctggccctgttggtgcccctggcaaagatggtgat
gttggtgctcctggaccttctggccctgctggacctgctggagagaagggagagcaggga
cctgttggttctcccggataccagggtctttctggaccccaaggtgctactggtgagact
ggaaagcctggtgagcagggtgctcccggtgaggctggaccccctggcccagctggtgga
agaggcgacagaggtttccctggtgagcgcggtgctactggcattactggcccaactgga
ccccgtggtgcccctggccctgctggtagcgacggacctaagggagagaccggtgctgct
ggtgcctccggtggtcttggagcccctggaatgcagggaatgcccggcgagcgtggagct
tctggtctccctggtgtcaagggagagagaggtgagcctggtggcaagggaggtgatggt
gcccctggcaaagatggcgtgcgtggtctgactggtgctattggagttcctggacctcct
ggtgctcagggtgagaagggtgagggtggcccccctggagtcactggaccctctggctct
cgtggtgcacctggtgagcgtggagagactggacctcctggacctgccggattcgctgga
cctcctggtgccgatggtcagcctggtgccaagggagagagtggtgatactggacccaag
ggagatgtcggtgctcctggacccagtggacctcttggaggtgttggtcctcagggacct
gccggtcctaccggacccaaaggtgctcgtggtggtgctggacctcctggtgctactggt
taccctggacccgctggcagagttggaccccctggcccttccggaactgctggaccccct
ggacccatcggacccgttggcaaagatggagcaagaggaagtcgtggtgagcctggccct
gctggtcgccctggcgaggctggtgctgctggacctccaggacctgctggagagaaggga
tctcatggtgctgatggagcccctggtccttctggtcttcccggaccccaaggtattact
ggacagcgtggtggtgtaggtctgactggacagcgtggagagcgcggtatgcctggtgta
tctggagcatctggtgagccaggaaagcagggatcctctggacctgttggtgagcgtgga
ccccccggacctgctggacccgctggactgtctggtgctcctggagaggctggtcgtgag
ggatctgccggtcatgatggtgcccctggccgcgacggacctcctggccccaagggagac
cgtggtgagactggtttggctggaccccatggaccaccaggtgctcctggagcccccgga
cctctcggcgcctatggcaaggctggtagccgtggagagactggtcccgctggtcctgcc
ggtccttctggccctgctggtgtccgtggtcccgctggccctgctggtgccaagggagac
agaggagaggctggtgaggctggagagagaggccacaagggacacagaggattcactggc
atgcatggtctgcccggacctgctggatctgttggagagagaggacctgctggtgccaat
ggacccgctggacctagaggacctgctggatctaacggcgccactggtaaggatggcatg
aatggtctgcctggacccatcggaccccctggacctcgcggtcgcaatggagatatggga
cctgctggacctcctggaccccctggacctgctggaccccctggacctcccggcaatgga
taccccttcatcagcccaccagctcaggagaaggcccctgatccctaccatggcggccac
tggcatgatgacgaccccaacgtggtgcaagatcgcgacatggaggttgacaccaccctc
aagaccctgacgcagaaggtcgagaagatccgtagccccgatggtacccagaagagccct
gcccgcatgtgccgtgacctgaagatgtcccaccctgagtggaagaccggcatttactgg
gttgatcccaaccagggctcttctttggatgccatcaaggtccactgcaacatggagact
ggccagacttgcatctaccccagcgagtccagcatccccatgaagaactggtacctcagc
aagaacatcagagagaagaagcacgtctggttcagcgagtccatgaccggtggattccag
ttccagtatggcagcgatggagctgattccgaggatgtcagcatccagatgaccttcatg
cgcctgatgtccaaccaggcctctcagaacatcacataccactgcaagaacagcatcgcc
tacatggactccgccaccggcaacctgaagaaggccctgcttctccagggctccaacgat
gtcgagatcagagctgagggcaacagccgcttcacatacagcgtcagcgaggatggctgc
acgtcacacactggcacatggggcaagacagtcatcgactacaagacatcaaaaacatcc
cgcctgcccatcattgacattgctcctatggatgttggtgcacctgatcaggaatttggc
gttgaagttggccccgtttgcttcttgtaa
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integrated database retrieval system
