Xiphias gladius (swordfish): 120794622
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Entry
120794622 CDS
T07311
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120794622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120794622
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120794622
Spliceosome [BR:
xgl03041
]
Complex C
Other components
Step II factors
120794622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120794622
NCBI-ProteinID:
XP_039991777
LinkDB
All DBs
Position
LG9:4522998..4534824
Genome browser
AA seq
1218 aa
AA seq
DB search
MADGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKQPTFDGFKALLLQN
GAEFTDSLISNLLRLIQTMRPPSQATTSKASETLVMPKTEKEKLKEMFPALCRPNDPAPK
KLLDEDDVKVAADAMKELEMFMPSVSGTDSKSSKSRLEKSRRHSRSRSRSKERDRHRDRD
RDRERDRDRKRRHRSRSRSRSRSRSRDRDRHRDKDRDRGKRRDKSSRWSDRSPSPRKDQD
RDSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRRE
GRVANVADVVSKGQRVKVKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGEEIS
LRNPDQPSNVNLGHAPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDE
TGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSAL
AKERRELKQAAREAEMDSIPMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHA
FGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYL
AEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMT
DGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDA
VKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTG
QEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIA
ETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRL
YTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLY
TLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPK
DKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM
LGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALF
NRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLY
NRYEEPNAWRISRAFRRR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggtggagtcgacgagctgtcgcagctcgaatatttgtctttggtgtccaag
gtctgcacggagctcgacaaccatctgggaataagtgacaaagatttagccgaatttgtc
atcagcctcgccgaaaaacaaccgaccttcgatggattcaaggctcttttgctccaaaat
ggggccgaattcaccgattctctcatcagcaatttgctcaggctcattcagaccatgcga
ccaccatcccaggccactacaagtaaagcctctgagactttggtcatgccgaagacagaa
aaggagaagttgaaggagatgtttcctgccctatgtagaccaaatgatccagcaccaaag
aaactactagatgaagatgatgtgaaagtagcagctgatgccatgaaggagctggagatg
tttatgcccagtgtcagtgggacagactctaaaagcagcaagagcaggctagaaaagagc
agacgccacagccgaagtcgcagcagaagcaaagaaagagaccgacacagagaccgagac
agggatcgggagagggacagggacaggaagagaagacatcgttctcgatcccgttccaga
tccaggtctcgctccagagaccgtgatcgacacagagataaagaccgagatcgtggcaaa
agaagagacaaatcttcccgctggagtgatcgttcacctagccccagaaaagaccaagac
agagactctgaccgctggaaggacaaacatgtggaccgccctcccccagaggagccttct
gttggagacatctacaatggcaaagtcacaagcatcatgcagtttggatgctttgttcaa
ctggagggtttaaggaaacgatgggagggtttggtccacatctcagagctgcgtagagag
ggccgtgtggccaatgtggctgatgttgtcagcaaaggccaaagagtcaaagtcaaggtg
ctctcattcactggctctaagaccagcctcagtatgaaggatgtggaccaggagacagga
gaagacctgaaccccaacaggaggaggaacgtaggcccagacggaggggaggagatctcc
ctgaggaatcctgaccagccgagcaacgtgaacctgggccacgcccctgagctggagcag
gacgacaccctggaacgcaagaggctcactaaaatctcggacccagagaagtgggagatc
aaacagatgatagccgccaatgtgctgtccaaggaagagttccctgattttgacgacgag
actgggattcttcctaaagttgatgatgaagaggatgaagacttggaaattgagctcgtt
gaagaggaaccaccattcctacgaggacacaccaaacaaagcatggacatgagccctgtc
aagattgtcaagaatccagatggctctctgtcccaggcggccatgatgcagagtgctctg
gccaaggagagacgagagctgaagcaggctgcacgcgaggcagagatggactccatcccc
atggggctgaataaacactgggttgacccgctgccagatgctgatggcaggcagatcgca
gccaacatgagaggcattggtatgatgcccaatgacatcccagagtggaagaaacatgcc
tttgggggcaacaaggcctcctatggaaagaagacccagctgtcaatcctggagcagagg
gagagcctgcccatctacaaactgaaggagcagctcattcaggctgttcatgacaaccag
atcctgattgtgattggagagaccgggtctggtaagacaacacagatcactcagtatctg
gcagaggcaggttacaccacccgggggaagattggctgtacgcagcctcgtcgtgtagcc
gccatgtcagtggccaagagagtgtccgaggagtatggttgttgtctaggacaagaggtg
ggttacaccatccgttttgaggactgcactagccctgagacggtaatcaagtacatgacg
gacggtatgctgctgagagagtgtttgattgactccgaattaggccagtacgccattatc
atgttggatgaagctcacgagaggacaatccatactgatgttctctttggcctgctcaag
aagactgtacagaaacgcaccgacatgaagctgattgtaacatcagctacactggacgct
gtgaagttctctcagtatttctatgaagcgcccatcttcaccatcccaggcagaacatat
ccagtggaggttctttacaccaaagagcctgagacagactacctggatgccagtctcatc
actgtcatgcagatccacctgactgaacctccaggtgacatcctggtgtttctgactgga
caggaagagatcgacacggcctgtgagatcctgtatgagcgaatgaagtcactgggacct
gatgttcctgaactgattattctgccagtgtattcagccctgcccagtgagatgcagacc
aggatctttgatcccgcacccccaggcagcagaaaggtggtcattgcgacaaacattgca
gagacgtctctgacgatcgatgggatttactatgtagtagaccctggctttgtcaagcaa
aaagtctacaactctaagactggcattgaccaacttgtggtgactcccatttcacaggcc
caggccaagcagagggcaggtcgagccggcagaacgggcccagggaagtgttacaggctc
tacactgagagagcctacagagatgagatgctgaccaccaacgtgcctgagatccagaga
accaacttggccagcactgtgctgtctctgaaggcaatgggcatcaatgacctcctgtcc
tttgacttcatggatgctcctcccatggagactctgatcacagccatggagcagctctac
actctgggagctctagacgatgaaggattactcacacggctgggtagacggatggctgag
ttccctctggagcccatgctgtgtaagatgttgatcatgtccgtccatctgggctgcagt
gaagagatgctcaccatcgtgtcaatgctgtctgtgcagaatgtcttctacaggcctaag
gacaagcaggccttggctgaccagaagaaggcaaagtttcaccaacctgaaggtgatcac
ctcaccttgctggctgtctacaactcctggaagaacaacaagttctccaacccctggtgt
tatgagaacttcatccaggctcgctccctgcgcagagcccaggatatccgcaaacagatg
ctgggcatcatggacagacataaactagatgtggtatcttgtggaaaagccacagtgcga
gtccagaaagccatctgcagtggtttcttcaggaatgcggccaaaaaggaccctcaagag
ggctacagaaccctcatagaccagcaagttgtatacattcacccctccagtgctctgttc
aaccgccagcctgagtgggttgtgtaccatgagttggtgctaactaccaaggaatatatg
cgagaggtgaccaccatcgaccctcgctggctggtggagttttctccagccttcttcaaa
gtgtctgaccccacacgcctcagcaagcagaagaaacagcaacgcctcgaacctctgtac
aaccgttacgaggagcccaacgcttggaggatctcccgtgccttcagacggcgctga
DBGET
integrated database retrieval system
