Xiphias gladius (swordfish): 120794634
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Entry
120794634 CDS
T07311
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120794634 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120794634 (msh2)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120794634 (msh2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
120794634
NCBI-ProteinID:
XP_039991799
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Position
LG9:7623622..7636639
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AA seq
935 aa
AA seq
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MAVQPKQNLSMDSAAEHGFLSFIFSMPEKPDTTFRVFDRNDYYTVHGRDAIFAAREVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYRNQSKSSKEHDWKLEYKA
SPGNLTQFEEILFGGGTGAEGCAGVVAVRSATGADGQRAVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQLGPKECLLAQGEGNADGNKLREVVERGGILVSDRKRAEFSSKDMVQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTVDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESLVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRVYQAVGQIPALIAAL
ERYSGSYQVLLEAVFLSPLRDLQTDFTKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDALEKSMHTVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQKLSDVIAQ
LDAVASFAVASVSAPVPYVRPRLSADGRRRMELLQARHPCMETDADTAFIPNDITFVQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSLIDSVLARVGAGDSQVKG
VSTFMAEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGCFCLFA
THFHELTALAACQPTVQNLHVTALTSHNTLTMLYRVKQGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGEKSEQEEEPEAKRRRTDKQVGENLIQDFLEKAKSLPVATMTE
EEVKAELRRMKRELVAKNNMYITEILARCVPVKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaacctgtccatggatagtgcagccgagcatggcttcctg
agcttcatcttctccatgccggagaagccggacaccactttcagagtgttcgaccgcaac
gactactacactgttcacgggagagacgccatattcgctgcgagggaagtcttcaagacg
aatggcgtcatcaaatatttgggctcagggagtcgcaagctggagagtgtggtcctgagc
aagctgaactttgaggcctttgttaaagacctgctgctggtgaggcagtacagagtagaa
gtgtacaggaaccagagcaagagcagcaaggagcacgactggaagctcgagtacaaggcc
tctccaggaaacttgacccagtttgaggagattttgtttggtggtggaaccggagcagag
ggctgcgcgggagttgtagctgtgcgctctgctacgggagctgacggacagcgcgcggtc
ggggtcggctatgtggacgcagcccagaggacgatgggagtgtgtgagttcccagacaat
gagatcttctccaacctggagtccctgcttgtccaactcggccccaaagagtgtctctta
gcccagggtgaaggcaatgctgatggaaataaactacgagaggtggtggagcgtggcggt
atcctggtctctgacaggaagagggcagagttcagtagcaaggacatggtccaggatctc
aacaggctgctgagagccaagagaggagagaccgtggccagcaacacgctgcctgagctg
gacaaacaggtggctatgtcatgcttggctgcagtggtgcgtttccttgaactgctctcg
gacgagtccaacttcaactccttcagtctgaccactgtggacctgggtcagtacatgaga
ctggacaacgctgccgtgagggctcttaacctcttccagggttcacctgacgacaccagt
ggggcccattcattggccggtctgttgaacaagtgccgtacgccgcagggtcagcggttg
gtcaaccagtggatcaaacaacccctcatggacaaaaccaaaatagaggagaggctggac
ctggtggagagcctcgtgtgcgactctgagctcaggcagacctgtcaggaggacttgctg
cggcggtttcctgatctgcaccgtctggccaagaagttccaccgtcactctgcgacgctg
caggactgctaccgcgtctaccaggccgtgggccagatccctgccctcatcgcagcattg
gagagatactcgggcagctaccaggttctgttggaggcagtgttcctctcccctctcaga
gacctgcagactgacttcactaagtatcaagagatgattgaaaccactctggacatgaac
cagatcgaccaccacgaattcctggtgaaggcgtcgtttgaccctgtgttgagtgagctg
agagaaaagatggacgcgctggaaaagagcatgcacacagtgctgaacagcgcagccaga
gaactaggtctggatgctggtaagacggtgaagctggagtcgaacgccatgctgggcttt
tacctgagagtcacctgcaaggaggagaagagtctgaggaacaacaagaaattcaccacg
ctggatgttcagaagaacggagtgcgcttcacaaacagtaagctgagctctctgaacgag
gagtacaccaagagcagggaggagtatgaggaggcgcagaatgcaatcgtcaaagagatc
atcaacattgcctcaggttacgtggatcccctccagaagctgagcgacgtgatagcacag
ctggacgcggtggcgagtttcgccgtggcgtccgtctccgctcctgtgccctacgttcgg
cctcgcctctcggctgacggccgcaggcgcatggagctgctgcaggccaggcatccctgc
atggagacagacgcagacaccgccttcatacccaacgacatcaccttcgtccagggagag
aagagcttctacattataacaggaccaaatatgggaggcaagtcgacgtttatccggcag
gtgggcgtgatcgctctgatggctcagatcggctgctttgtaccatgcgagaaggcagag
ctcagcttgattgacagtgtcctagccagggtgggcgcgggggacagccaggtgaaaggc
gtgtccaccttcatggctgagatgttggagaccgctgccattctgcgctcggccacggag
aactcgctcatcataattgacgagctgggcagaggcacgtccacgtacgatggcttcggt
ctggcctgggccatcagcgaacacatcgcctccaaaatcggctgcttctgcctgtttgcc
acgcacttccacgagctcacagcgctggcagcatgtcagcccaccgtccagaacctgcac
gtcacggccctgacctcccacaacacactcaccatgctgtacagagtcaaacaaggtgtg
tgcgaccagagtttcggtatccacgttgctgagctagcgtgtttcccaccatcggttgtt
gccatggcgaaggagaaggcggaggagctggaggagttccaggaacctgcaggggagaaa
tcggagcaggaggaagaacctgaggccaagagacgacggacggacaaacaagtgggggaa
aacctgatccaggacttcctggagaaggcgaagtcgcttcctgttgccaccatgactgag
gaggaggtgaaggcagagctcaggagaatgaagcgggagctggtcgccaaaaataacatg
tacatcacagagatcctcgcacgctgtgttcctgtaaaaactgcttga
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