Xiphias gladius (swordfish): 120795515
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Entry
120795515 CDS
T07311
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04140
Autophagy - animal
xgl04148
Efferocytosis
xgl05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120795515 (vps39)
04148 Efferocytosis
120795515 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120795515 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xgl04131
]
120795515 (vps39)
Membrane trafficking [BR:
xgl04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
120795515 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
120795515
NCBI-ProteinID:
XP_039993398
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All DBs
Position
LG10:complement(22395335..22419932)
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AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQTISGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVEYLQRLGVENLG
IIFEFSPWVLKICPDDGLKIFTEDLTEVETLPRDKVLNFLKEGFTELAIPYLEHIIYVWD
EKGPEFHNVLIQLYLERVQVLMKEYLNSLPEGVSAVAAGKEKGKLGEFRNKLLSFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILRDTHMAEEYCHRHYNSLVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSGPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEEKAQMKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRNVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctatgaaccagtgcctattttggaaaagcttcctcttcagattgactgt
cttgcggcctgggaggactggctgcttgttggaacaaaaccagggcatctcctcctctac
cgaattaagaaagatgcaggcaccaaccggtttgaggtgacactggaaaagtccaataag
aacttctcaaagaaaattcagcagctctacgttgtctcacagtacaaaattctcgtcagt
cttctggagaacaacatccacgtccatgacctcctcaccttccagcagatcactgtggtg
tccaaagccaaaggagccacgctctttgcatgcgacctgcagcaaaccatctcaggagag
gaaaggttgagaatgtgtgtcgcagtaaaaaagaaactccagctgtattactggaaggat
agagagttccacgagctacagggggactttggtgcaccagatattccaaagtccatggca
tggtgtgaaaactccatatgtgttggtttcaaacgagactattaccttattcggatggat
ggccgtggctccatcaaagagctcttccccactgggaaacagttagaacctctggttgcc
ccactggctgatgggaaggtggctgttgggcaggatgacctaactgtggtcctaaatgaa
gagggcgtttgcacccagaagtgtgccctgaactggacagacatccctatagcgatggag
caccagcctccatacatcattgctgttctccctcggtacgtggagatcaggacctttgag
ccgaggctgctggtgcagagtgtggagctgcagagacctcgcttcatcacctcagctggg
caaaatattgtgtatgttgccagcaaccactttgtgtggcgcctggtgcccgtgtcaata
gccagccagatccgccagcttcttcaggacaagcaatttgagctggctcttcagctggcg
aagatgaaggatgattcagatggtgataagaagcagcagatacatcacatccagaatctc
tatgccttcaatctgttttgccagaagagatttgatgactccatgcaggtgtttgccaaa
ctcggaacagaccccacccacgtgatcggactgtacccggacctgctcccgtcagactac
cgcaaacagctgcactatcccaaccctctgcccacactgtccggggcagagctggagaag
gctcatctcgcgctcattgattacctcacccagaaacgcagccacctggtgaaacagctg
aatgactctgacccttccacaacatctccactcatggagggcaccccgactattaaaagc
cgcaagaaactcctgcagatcattgataccaccctactgaaatgttacctgcataccaat
gtggccctggtgtcccccctgctgcgtctcgaaaacaaccactgccacatcgaggagagc
gagtatgtcctcaagaaggctcacaagtatagcgagctcattattctgtatgagaagaag
ggcctgcaccagaaagctctgcaggtgctgctggaccaatccaccaaggccaactctccg
ctgaagggccacgagcgaacagtggaatacctccaaagactgggagtggagaatctgggc
ataatctttgagttttccccctgggtgctgaagatctgtcctgatgacggcctgaagatt
ttcaccgaggacctgacagaggtggagactttgccccgagacaaggtgctgaatttcctg
aaagagggctttaccgagctcgccattccatatttggagcacatcatctatgtgtgggat
gagaaggggccagagtttcacaatgtgctcatccagctctacctggagagggttcaggtc
cttatgaaagagtacctcaactcgctgccagaaggtgtttcagccgtcgctgcaggaaag
gagaagggcaaactgggagagttcaggaacaagctgctgtctttcctggatatttctacc
agctacgaaccagccagactcatcagtgactttccctttgatggcctgctggaggaacgg
gctctgcttctgggtcggatgggtaaacacgagcaggcgctcttcatctatgtgcacatc
ctgagagacacccacatggctgaagaatactgtcaccggcactacaacagtttagttgaa
ggaaataaagatgtttatctgtctctgctgagaatgtacctgtccccgcctgacgtccac
tgcctggggcccatcaagatggagctgtcgggacctcaggccaacctccaggcagccctg
caggtcctggagctgcaccacagcaagctcaacaccaccaaggccatcaatctgctccca
gcaaatactcagatccgagagatccgggttttcctggagagcgtcctggaggagaaggct
cagatgaaacgctgcaaccaggtgctgaagagtctcctgcaggccgagttcctcagggtg
caggaggagcgtatcttccaccaacaggtgaaatgtgtcattacagaggaaaagacctgc
agagtttgcaagaagaaaataggaaacagtgcatttgccaggtatcccaacggtgtggtg
gttcattacttctgctgcaaagaccgcaacgtgtgtcccactgagcagtaa
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