Xiphias gladius (swordfish): 120796186
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Entry
120796186 CDS
T07311
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120796186 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120796186 (msh6)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120796186 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
120796186
NCBI-ProteinID:
XP_039994596
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Position
LG11:complement(17419716..17427593)
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AA seq
1385 aa
AA seq
DB search
MAKQSSLFNFFTKSPPQVSKPKPSPSPAEADLPSSVEKSNSSPKEQAKQTPPPQQPTKTN
KVKPKSDSKSAKGGFKKLFGDKAPKTKESSSTSSFSAGALVWAKLEGHPWWPCMVVPQPL
TGQQMRGRGRDQRIHVHFFDKPPTRGWVSTKYIREYQGSESSDAKTGGVFFSSKPVIRHA
MELADGVMFDSPEKRLKMPLCTDPSDEEEDDDDDEEMELDKSRVTDEEVSDEDDQKNGEV
KSSKVSGRSSRASTEKGNKAKRRRIIVASDSDDSDEEFKPDNAASSSEDEEEEVAVSSEE
EEEESTHESEVESPVKPVKRKRPAEKSANVKAKVTTTPSAAPKRAPAAMAADTKSRLSAF
TAPESFESQANGSGTIGGATVWDHEKLEWLQDGRRKDGRRRRQTEDDYDPSTLYVPEDFL
NRNTPGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNKLGLTFMKGTWAHSGFPE
IGFARFSDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKFDRVVRREVCRIITRGTQT
YSVLDGAPSESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHCSRL
RTLIAHFALAEVLFERGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDY
FKETASKQQEAGHSFLPPLLKKMTSESDSLCLTPKEGYELALSALGGCISYLKKCLVDQE
LLSMANFEEYVPVDVEMEKAAGPASFFAQTRQRMVLDGVTLANLEIFQNGSGGTEGTLLE
RLDTCSTPFGKRLLKQWLCAPLCNPTSIRDRLDAMEDLMGAQAQATEVSDLLKKLPDLER
LLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISVLAPVSG
QFRSTLLRQVVSLKSAKDGLFPDLSAELRRWETAFDHQKARTTGVITPKAGFDPEYDQAL
TGIKNCEQELQGYLDRQKKRLGCKNMAYWGTGRNRYQMEVPDSVSERNIPEEYEVKSTKK
GWKRYVTKETERLFSELQGFEEKRDAALKDCMRRLFYNFDKDYRDWKTGVECMAVIDVLL
ALSRYSQGGDGPMTRPEVVLPEDDDQVVPFVDLSGSRHPCVTKTFFGDDFIPNDIFIGCP
GSGETDEGKGNALCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFT
RLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKEL
AEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGACP
KSYGFNAARLASLPEEVIQSGHKKAGEFEKSTISLRLFKKLCQFAEDATQSNTHFASLVQ
MLNNL
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctctcttttcaattttttcaccaagtctccgccgcaggtctccaag
ccgaagcccagtccctctccggccgaggcagacctgccttcctccgtggagaagtccaac
tcgtcccctaaagagcaagctaaacagacaccaccaccacaacaaccgaccaagaccaac
aaagtcaaaccgaaaagtgactccaagtctgccaaagggggattcaagaaactatttggc
gacaaggccccgaagaccaaagaaagcagctccacatcctcattcagcgccggtgccctt
gtgtgggcaaaactggagggacacccctggtggccgtgcatggtggtaccacaacctctg
actggccagcagatgaggggccgaggtcgagaccaacgcatacatgtccatttctttgat
aaacctcccactagaggatgggtcagcaccaaatatatcagagagtaccaaggctctgag
agcagtgatgctaaaaccggaggggtgttcttcagcagcaagcctgtcatccgtcatgca
atggagcttgctgacggagtcatgttcgacagccccgaaaaaagattaaagatgcctctc
tgcacagatccatcagatgaggaagaggatgacgatgatgatgaagaaatggagcttgac
aagtcaagagtgactgatgaagaggtcagtgatgaggatgaccagaaaaatggggaagtg
aagtcatccaaagtcagtggccgttcatcccgtgcttcaacagaaaaaggcaacaaggcc
aagcgacgtcgcattattgtagcctcagacagtgacgactcagatgaggaattcaaacca
gataatgctgcgtccagcagtgaggatgaagaggaagaagtggcagtgagtagtgaagag
gaggaagaggagagcacgcacgagtcagaagtagaaagccccgtcaagcccgtgaagcgc
aaacgtcctgcagaaaagtctgctaatgtaaaagccaaagtgaccactaccccgtctgct
gcccctaaacgagctccagcagctatggcagctgacacaaagtctcgcttgtcagccttc
actgcccctgaaagcttcgagagccaggcaaatggttcaggtaccattggaggggcaaca
gtttgggaccatgagaagctggagtggttgcaggatggcaggaggaaagacggccgaagg
cggcggcagacagaggatgactacgatcctagcaccctgtatgtgcctgaagactttcta
aacagaaacactcccggtatgcgtcggtggtggcagctcaaatctgagatgtttgataca
gtgatcttctacaaggttgggaagttctatgagctctaccacatggatgctgtgattgga
gtcaacaagctgggactgactttcatgaaggggacctgggcacactcaggctttccagag
atcggcttcgcacgtttctcagatgtgctggtccagaagggctacaaggtggcgcgagtg
gagcagacagagaccccagagatgatggaagcacgctgcaagaccatggctaagcccaca
aaatttgaccgtgtggtgagaagagaggtgtgccggattatcacacgtggtacccaaacc
tacagtgtgttggacggtgctccctcagagagtcagagcaagttcctgctgagtttaaag
gaaaaggctgaagaggaaagctccggtcgttgccgcacctacggagtctgctttgtagat
acctctgtgggttattttcatgtaggccagttcccagacgatcgtcactgctcacgcctg
cgcaccctgattgcacactttgcccttgccgaggtgctctttgaaagagggaacccatct
gttgaaacgcgcaaaatactcaaggcctctctgtcctctgctttgcaggaaggacttaat
gcaggaacacagttctgggatgcgcagaagactcttaaaaccctctcagaggaagactac
tttaaagagaccgctagcaagcagcaggaggctggacacagttttcttcctcctcttcta
aaaaagatgacctctgagagtgattcgctgtgccttactcctaaagagggatatgagctg
gcactgtcagcactgggtggatgcatttcctacctgaagaaatgtctggtagaccaagag
ctgctctccatggccaactttgaagaatatgtccctgttgatgttgagatggagaaagct
gctggacctgccagtttctttgcccagactcgtcagcgaatggtcctcgatggagtgact
ctggcaaacttagaaatctttcagaatgggtcaggaggaacagagggcacgctgctggag
cgtttggacacgtgctctaccccttttggcaagaggctgctgaagcagtggctctgtgct
cctctgtgtaaccccacatccataagggacagactggatgcaatggaggacctgatggga
gctcaggcccaggctactgaggtttcagacctgctgaagaagctcccagatttggagcgt
ctcctgagtaaaatccacagcattggcactcctctgaagggccaggaccaccctgacagc
agagcagttctctacgaggaggtcacctacagcaagcgcaagatagcagacttcctctca
gcactggaaggtttcaaaactatgcaggagattatttctgtcctcgctccagtttcaggt
cagtttcgctccacgttgctccgtcaagttgtcagtctgaaaagtgcaaaggatggcctc
tttcccgacctctctgctgaactcaggcgctgggagacagcctttgaccaccagaaagcc
cgcactactggtgtcataaccccaaaagctggctttgaccccgagtacgaccaagctctg
accgggatcaagaactgtgaacaagagctgcagggttacctggacagacagaagaagaga
cttggctgtaaaaacatggcctactgggggactgggcgaaaccgctaccagatggaggtg
cctgacagcgtctcagagaggaatatccctgaggagtacgaggtgaaatctacaaagaaa
ggctggaagcgttacgtgacaaaggagactgagcggctgttctccgagctgcaaggattt
gaggagaagagagatgctgccctgaaggactgcatgaggaggctcttctacaactttgac
aaggactacagagactggaagactggtgtggagtgcatggcagtgattgatgtactgctg
gccttgtcacgctacagtcagggtggagacggaccaatgaccaggccagaagtggtgctc
cccgaggatgatgaccaggtagtgcccttcgttgacctcagtggatcccggcacccctgt
gtcaccaagaccttttttggtgacgacttcattcccaatgacatcttcattggctgccct
ggtagtggtgaaacagatgaggggaaaggtaacgccttgtgtgtccttgtcacggggcca
aacatgggtggaaagtccactctcatgagacagtgtgggcttgtgatcatcctagctcag
ctgggttgctatgttcccgctgagagcctgcgcttcacaccggtggacagggtcttcacc
cggctgggagcctcagatcgcattatggctggagagagtaccttctttgtggagctaagt
gagactgccagcatcctgcaccatgccactaaacactcactcgtgctcctggatgaatta
ggaaggggcacagctacatatgatggcacagcgatcgccagcgctgttgtgaaggagctt
gctgagaaaatctgctgtcgcaccctcttctccacacattaccactccctggtggaggac
tatgccaacaaccccgctgtgcggttaggccacatggcatgcatggtggagaatgaatgt
gaggatccaagtcaagaaaccatcacattcctctacaagttcatcactggagcttgtcca
aagagttatggcttcaacgctgctcgacttgccagcctgccagaggaggtcatccagtca
gggcacaagaaggccggagagtttgagaagagcaccatcagcctccgactgttcaagaag
ctctgccagtttgctgaggatgccacacagagcaacacacactttgcttcacttgttcag
atgcttaacaacctgtag
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