Xiphias gladius (swordfish): 120796592
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Entry
120796592 CDS
T07311
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120796592 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xgl04121
]
120796592 (herc4)
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120796592 (herc4)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
HECT type E3
120796592 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
120796592
NCBI-ProteinID:
XP_039995530
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All DBs
Position
LG11:20656897..20666630
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AA seq
1047 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRKCEFFHGKQVCDVGCGRRHTAFLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIIVAVSCGESHTHALNDKGQVFSWGLGSDGQLGLNN
FEECVRVPRNIKSLSDVQIAQVACGYWHSHGLSRGGQVFSWGQNRYGQLGLGIKGQSIST
PQIIQSLQAIPFAQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDTNDRCFPALLKSLR
SQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIA
CGRQHTLAFTPSSGKMDSFGLGGNGQLGTRSTCNRKSPAPVKGPWVASNAPADTESQQCC
CVKRIHAGGDQSFAHYCTASNLQSMDDVRIQDPHRGICTLNEDIIQKWLNHSPGRLPLEI
SNEIDLVFSSASCLNGSFLSMSHPDHYSTSSKYSGVDMNMARILFHRLIQQDHPEIAQQI
AASLEKNLILRLSSSPPDIEALRLYLILPECPLFSERNNYVTIAIPFAKSLLSLKEAPLR
VLGNWWSTFEPPVFQWLVELYKEVVVYLLQMHKVGIPSVEQRIFTCFLDTSLRLLEILHT
VSERAGHIIQYDKFYIHELDDLIDIRNDYVTWIQRQMYPLGHDGVVTLCRYPFVFDAQAK
TTLLQTDAVIQMQMAVDQAQMQNFSSMFLPAVESVNPCLILIVRRENIVGDTMEVLRKSK
NVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSNKTFE
DIDLFNLIGVICGLAIYNLTIVELNFPVALYKKLLKRKPTLDDLKELMPDVGRSLQQLLD
YTEDDLEETFCLNFTITEENYGATEVLELVPNGEDINVNTSNKQDFVNAYVDYVFNTSVA
PLFECFYAGFHKVCGGKVLDLFQPNELQAMVIGNTNYDWMELEKSTEYKGEYWTDHPTIR
LFWEVFHSLPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQPTGGGEHYLPVAHTCFNLLD
LPKYTSLETLQEKLLQAIDHNQGFNLA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggaaatgcttcctacggacagctgggcttgggtgggattgatgaagag
atcgtggttgagccacgaaaatgtgaattctttcatgggaagcaagtgtgtgatgtgggg
tgtggccgcagacacacagccttcctgctggaggatgggacagtgtacacctgtggctgc
aacgacttagggcagctgggacatgagaagtccagaaaaaaaccagaacaggttgtggcc
ctggatgcacagatcatagtggcagtgtcatgtggagagtcccacacacacgccctgaat
gacaaagggcaggttttttcgtggggtctgggctcagatgggcagctgggcctaaataac
ttcgaagaatgtgttcgtgtgcctagaaacatcaagagtttgtcagatgtacaaatcgct
caggtagcctgtgggtattggcactcacatggactttcaagagggggccaagtcttctcc
tggggccagaatcgatatggacaacttgggctaggaataaagggacagagcatttccaca
ccccaaatcattcagtctctgcaggctattccttttgctcagatatcagcgggtggtgct
cacagctttgccctcactctctcaggagcggtgtttggttgggggcgcaacaagtttggt
cagctgggtctcaatgacaccaatgatcgatgtttcccggccctgctgaagtcccttaga
tctcagagagtgatttacatctcctgtggagaagatcacacagcagcactgaccaaggaa
ggaggtgtgtttacatttggagcaggaggatatggacaacttggacataactctacaaac
catgaaatcaaccctaggaaagtgtttgagctcatgggaaatgtagtcacgcagattgca
tgtggaaggcagcacacgttagctttcacaccttcctctgggaagatggactcatttggg
cttggtggtaacgggcagcttggtacacgctccacttgcaacaggaaaagccccgccccc
gtcaaaggcccctgggtagcctccaatgctccagcggatacagaatcgcagcagtgctgt
tgtgtcaagaggattcatgccggaggagatcagagctttgctcactattgcactgccagt
aacctccagagcatggatgatgtgaggatacaagatccccacagagggatttgcaccttg
aatgaggatatcatacaaaaatggttgaaccattcaccaggaagactcccgctcgaaatc
tccaatgagattgacctcgtgttctcctcagcaagctgcctcaatggatcttttctgtca
atgagtcacccagatcactacagtaccagcagcaaatattcaggggtggatatgaacatg
gcgcgcatcttgtttcacaggctgattcagcaagatcacccggagatagctcagcagatc
gctgccagtctggaaaagaacctgattctgagactgagcagctctcctccagacattgaa
gccctgagactctacctcattctcccagaatgccctctcttcagtgagcgaaataattat
gtgaccattgctattccttttgccaagtccctcctcagcctgaaagaggctccactgagg
gtgctaggaaactggtggtctacgtttgagcccccagtcttccagtggctggttgagttg
tacaaggaggtggtggtttatctgcttcagatgcacaaggtgggcattccttcagtagag
cagaggattttcacctgtttcctggacacgtccctccgactcctggagatcctgcacacg
gtgagtgagagagcaggacacatcattcagtacgataaattctacatccacgagttggat
gacttgatagatatcagaaatgactacgtcacatggattcagaggcagatgtacccactg
ggtcatgatggtgtggtgactctgtgcaggtatccttttgtatttgatgcccaagcaaag
accactctgcttcaaactgatgctgtcatacagatgcagatggcagtggaccaggcacag
atgcaaaacttcagctccatgttcctgccagcagtggaatctgtcaacccatgcctcatc
ctcatcgtccggagggaaaatattgttggagacaccatggaagtcctcaggaagtccaag
aacgttgactacaagaaaccactcaaggtgatctttgtgggagaggaggctgtcgatgca
ggaggcgtgagaaaggagttcttcctcctgatcatgaaagagctgctggatcccaaatat
ggcatgtttcgttactacgaggagtccaggctcatctggttttcaaacaagacctttgag
gacattgacttgttcaacctcatcggagtcatctgtggtctggccatctacaatctcact
atagtggagctcaacttccctgtggccctttacaagaagcttctgaagaggaagccaaca
ctagacgacctgaaagagctaatgccagatgtgggaaggagtctgcagcagttgctggac
tacactgaagatgaccttgaggaaacgttctgcttgaacttcacaatcacagaggaaaac
tatggtgccacagaggttttggaactagtaccgaacggcgaggacatcaatgttaataca
tcaaacaagcaggactttgtcaacgcctatgttgactatgttttcaacacgtcagtggcc
ccactgtttgaatgcttctatgcaggctttcacaaagtgtgcggtggaaaggttttagac
ttgttccagccaaacgaactgcaagccatggtcattggcaacaccaactatgactggatg
gagctcgaaaagagtactgaatacaaaggggagtattggacagatcatcccaccatcagg
ctcttctgggaggtgttccacagtcttcctttagagaagaaaaaacagttcctcttgttc
ctcacaggaagcgaccgcatacccatcttgggcatgaaaagcctgaaactggtgatccag
cccaccggtggaggggagcattatttacctgtcgcccacacctgcttcaacctgctggac
ctgcccaagtacacgagtctggaaacgctccaagagaagcttctacaggctatagatcac
aaccaaggctttaatcttgcctga
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integrated database retrieval system
