Xiphias gladius (swordfish): 120797214
Help
Entry
120797214 CDS
T07311
Symbol
col4a6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04382
Cornified envelope formation
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120797214 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120797214 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120797214 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120797214 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xgl04147
]
120797214 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120797214 (col4a6)
Exosome [BR:
xgl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120797214 (col4a6)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120797214 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120797214
NCBI-ProteinID:
XP_039996594
LinkDB
All DBs
Position
LG12:complement(16197768..16332303)
Genome browser
AA seq
1716 aa
AA seq
DB search
MKFVICVIAAALAVRSTHGGNKFDEPCAGLDCSGGCRCNPEKGSRGRPGPLGEVGQNGPE
GPRGSPGPPGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGTDGVPGHPGQEGGRGLPGLD
GCNGTRGDQGEPGFGTGSPGFPGPAGPTGPKGQKGEPRYISDNGLTSFPGAPGLDGQPGI
RGPDGPSGVAGPRGPEGFPGPPGPPGPPGLMGSRSDGYQGEKGDKGDVGLPGDPGQPMIN
GIVEFVGFPKGDKGMQGEPGQKGFTGFPGNPGQPGPFGYLGEPGEKGIPGYPGGRGPPGF
NGPPGAPGQQGFGGNPGFPGQPGYIGPKGDQGDPGPPGPPAYINELGTSVQGLPGDPGLS
GLPGTPGDQGAPGFPGQPGPPGTVLDPTFAGRPGSPGFPGTPGPKGEKGNAGIPNYGIEG
IPGAPGLPGPIGPPGPPGPTSLAVDPCVIYPRPKGSPDGRPTSYPGQPGPPGPRGEPGDT
GYKGFRGDPGDCACLGGGSPGFPGLPGPPGASGSPGLTGRKGELGDTGSPGFDGVQGPPG
RPGETGIFGRKGEKGAPYYPSLGLGVKGELGAPGPRGPTGETGKVGRDGLPGSPGAPGPP
GDAGFGTVGEKGFPGFPGPKGRPGSAGEPGIGYLGTPGFRGEPGEPGIPGLPGQPGLPGP
RGENSCGGVNDVGEGTGQVLPCTIPGEDGEPGFPGVPGRPGPKGQAGFPGEPGRPGFDGS
KGERGDSGSGGRPGPQGFPGPRGDSGFPGVPGQSFDGARGKDGVPGRPGAKGQPGEVLGA
TPGAPGQDGLPGLSGDKGQPGTPGGPGSPGFDGRSGVPGLKGERGVDGLPGFPGLPGPPG
EPTGGIPGRPGAPGSKGLSGPPGCQGFPGRKGDRGDPGFPGPAGMKGTPGQPGTPGSLGP
RGPPGLPGPGTREGIPGVPGRKGERGFPGLMGFPGLPGRSGTPGFPGGKGLSGGPGRNGF
PGGPGYPGQKGERGYPGPPGLPSLPGPSLLEEKGDPGNPGSSGLTGFPGPRGDKGLPGLP
GRQGLPGLPGFAEQSKGQPGQPGFPGQPGVPGFPGQKGEAGIMGFPGISGPRGDDGAPGF
SGNPGESGRPGTKGLPGETYGYPGAPGAKGQQGDSGYPGGRGNDGTPGDNGFPGSPGFPG
XKGAPGEAGRPGIMGSPGFPGPKGLVGFPGRKGLDGSPGLPGGPGGPGAKGLSGSPGLDG
LNGLAGPKGLPGTPGGSAGGLPGAPGFPGLKGERGVSYPGAPGFPGSKGERGQPGGPGLT
GFPGRPGLPGETVGSDIPGPIGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDSGLP
GFPGSPGVKGESGVPGGSGFPGVPGFKGARGETGFSGGPGLKGFSGDPGFYGNKGAKGLQ
GRPGRKGFPGGTLPISPGDLARPLGDLGFPGESGAPGGLGDSGQPGIPGRPGPKGRPGPV
GKLGRTGATGLPGSVGDPGPPGFPGPTGEQGFPGTVGRPGIPGSVGRSYSIGYTLVKHSQ
NFQVPMCPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEICYY
ASRNDKSYWLSTTAPIPMMPVAEEQIQPYISRCSVCEAPSQAVAVHSQDINIPSCPPGWR
SLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLT
TVDPSQEFVYSPTQETMKGGQERSKVSRCQVCSKIL
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgtgatttgtgtgatagcggcggccttggcggtgagatctacacacggaggt
aacaagtttgacgagccgtgtgcaggcctggactgcagcggaggatgcaggtgcaaccca
gagaaaggcagcaggggtcgtcctgggcctctcggagaagttggtcagaacggaccagag
gggccgcgtggcagcccgggacctccagggcctaaaggagagaagggccacattggactg
aaaggaccgtctggccccaaaggggacaaaggacctatgggagtgccagggttccaagga
actgacggagtgcctggtcaccctggtcaggaaggtggcagaggtttaccaggactggac
ggttgtaatgggacccgaggagatcagggagaaccgggcttcgggacaggatcacctgga
ttccctggacctgctgggcctactgggccaaagggtcagaaaggagagcctcggtacatt
tcggataacggcctcacgagttttccaggtgcaccaggactggacggccaacctggtatc
agaggtcctgatggtccatctggtgtggctggtccgagaggccctgagggattccccggc
ccgcccggtcctcccggtcccccagggctgatggggagccgtagtgacggatatcaagga
gagaaaggagacaagggcgacgtgggcttgcccggcgaccccggccagccaatgatcaat
ggcattgtggagtttgtgggttttcccaaaggagacaaaggaatgcagggggaacctggc
caaaagggattcacagggttccccggcaatcctggccaacctggacctttcggttatctt
ggtgaacctggagaaaagggcattcctggataccccgggggaagaggtcctccaggtttt
aacggccccccgggtgctccaggacaacagggattcggaggtaatccaggtttccccggg
caaccaggatacatcggacccaagggagaccagggagaccccggaccaccaggaccccct
gcttacattaatgagctgggcacctccgttcaaggacttccaggtgacccgggtctcagt
ggcctgcccggcaccccaggtgaccagggagctccagggttcccaggacaaccaggccca
ccggggacagtgttggatcccacgtttgcaggtcgcccaggctccccaggttttcccggg
accccaggcccaaagggggagaaaggtaacgcgggcataccaaactacggcattgaagga
atcccgggcgcccctggactccctggacccatcgggcctcctggacctccgggccctacc
agcttggccgttgatccctgtgtcatctatcccaggcccaaaggttctcccgatggccgc
cccaccagttaccctggacagcctgggccgcctggccccagaggagagccgggtgacacg
ggatacaaaggcttcagaggtgatcctggcgactgtgcctgcctagggggaggctcccca
gggtttcctgggttacccggaccccccggagccagcggcagccccggcttgactggacga
aagggggagcttggtgacactggttcacccggctttgatggtgttcagggacctcctggt
cgacccggcgaaacgggtatctttggtcgtaagggagagaagggggcaccctactacccc
agcctgggtttgggggtgaaaggagagcttggagctccaggacccagaggacctacaggt
gaaaccggaaaggttggcagagatggactgcctggctcccctggagcccctgggccccca
ggtgacgctggcttcggcacagtcggcgagaaaggtttcccagggttcccagggcctaag
ggtcgtcccggcagcgcaggcgagcccggcattggctaccttggcacccccggctttcgc
ggagagcctggagagcccggtatacctgggttgccagggcaaccaggtttacctgggccg
agaggtgaaaacagctgtggaggggttaatgacgtcggagagggaacgggccaagtgcta
ccttgcaccatacctggtgaggatggagagcccggtttccccggtgtacctgggcgacca
ggcccgaaaggtcaggcaggttttccaggagaaccaggacgtccagggtttgacggttcc
aaaggagagagaggagactctggttccggaggccgacctggaccacaaggtttccctgga
cccaggggagattctggatttccgggtgtcccagggcagagtttcgacggagccaggggg
aaggatggtgttccagggcgtcctggagccaaaggtcagcctggagaggtgctgggagcc
acacccggtgctccagggcaggacggtttaccaggactttctggagacaagggccaacct
gggacaccaggaggacctggatcacctggttttgacggacgctccggtgttcctgggcta
aaaggagagcgcggtgttgacggtctccctggttttcccggccttcctggacccccaggt
gagccgacgggtggcatccccggtcggcctggggctcccggcagcaagggactgagcggg
ccaccaggctgccaaggtttcccaggtcggaagggagacagaggagacccaggattccca
gggcctgctgggatgaagggaaccccaggacagcccggcacccctgggtcactagggcca
aggggaccccccggacttccaggaccaggaactagagagggaatcccaggagtgccagga
aggaagggtgagagaggtttcccaggactgatgggtttcccgggactaccagggcgttct
ggtactccaggatttcctggaggaaaaggactgtctggagggcctggaagaaatggattt
cccggtggacccggataccccggacagaaaggtgagagaggataccccggccctcccggc
ttgccctctcttcctggtccatcactgttagaggagaaaggagaccctggaaaccctgga
agcagcggccttactggcttccccggacccagaggtgacaagggtctgccaggtctgcct
ggtcgccagggcctgcctggacttcctggttttgctgagcagagcaaaggacagccggga
cagccagggtttcctggacagccaggagttccaggcttccccggacaaaagggagaggct
ggaatcatgggattccccggcatctctggtccaaggggtgatgatggtgcacctggtttc
tctggtaatcctggagaatctggccgacctggtaccaaaggtctgcctggagaaacctat
ggttatcctggagctccaggagctaaaggccagcaaggagactcaggctacccaggtggt
cgtggcaacgacggcacccccggtgacaacggctttccaggaagtccaggtttccccgga
ngcaaaggagctcccggtgaagcagggcggcccggaataatgggctcccctggtttccct
gggccaaagggtctggtaggcttcccaggaagaaaaggactagatgggtctcctggtctg
cctggaggtcctggaggacctggagccaaaggtttgtctggatcccctggtttggatgga
cttaatggccttgctggacctaaaggcctccctggaaccccaggtggaagtgcaggaggt
ctcccgggtgcccctggttttccagggttgaagggagagagaggcgtctcctacccaggc
gccccaggcttccctggatcgaagggagagagagggcagccaggtggtcctggactcaca
gggttccccggtcggcccggacttcccggtgagactgtggggtcggatatcccgggacct
attggagaccctggcctccctggactggacggagagtacggtttccaaggtcctccgggt
ccacccgggccacctggtccaggcacagcccagggagatagaggtgactctgggctccca
ggcttccctggctcccccggcgtgaaaggagagtcaggagtccccggaggctctggattc
cccggcgtccccggattcaaaggagcacgaggtgagaccggtttcagtggaggtcctggt
ctaaagggtttctctggtgaccccggtttctatggaaacaaaggagccaagggacttcaa
gggcgtcctggtcgtaagggtttccccggaggcacgctgcctatatcaccaggagacttg
gcacgacccctcggagacctgggctttcccggtgaaagcggagcccccggtggcctcgga
gattccggtcagccgggaatccctggacgtccaggtcctaaaggtcgtcctggtcctgtg
ggtaaactgggcaggactggagctacgggtctgcctggatctgtcggtgaccccggaccc
cctggtttccctggacccactggagaacaaggttttcctggtacagtcggtcgtccaggc
attcccggcagcgtcggccgcagttacagcatcggctacaccctggtgaagcacagccag
aacttccaggttcccatgtgtcctcagggcatggccaaactgtgggacggatacagcctg
ctgtacgtggagggacaggaaaaggcacacaaccaggatctcggtcagccagggtcatgc
ctccccaggttcagcaccatccccttcctctactgctcccccaatgagatctgctactac
gccagccgcaacgacaaatcctactggctctccacaaccgcacccatacccatgatgcct
gtggccgaggagcagatacaaccttatatcagcaggtgttcagtttgtgaggctccatct
caggctgtggcggtccacagtcaggacattaacatacccagctgtcctcccggctggagg
agtctctggataggatactccttcctgatgcacacggcggccggcgctgagggcggcggt
cagtccctggtgtctcccggctcctgcctggaggatttccgtgcaacgccgttcatcgag
tgcaacggggccaagggcacctgccactactttgccaataagtacagcttctggctcacc
actgtggatcccagtcaggagttcgtctactccccgacgcaggagaccatgaagggtggc
caggagcgctccaaagtcagccgctgccaagtctgcagcaagatcttgtag
DBGET
integrated database retrieval system
