Xiphias gladius (swordfish): 120797215
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Entry
120797215 CDS
T07311
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04382
Cornified envelope formation
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120797215 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120797215 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120797215 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120797215 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xgl04147
]
120797215 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120797215 (col4a5)
Exosome [BR:
xgl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120797215 (col4a5)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120797215 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120797215
NCBI-ProteinID:
XP_039996595
LinkDB
All DBs
Position
LG12:16334939..16393989
Genome browser
AA seq
1691 aa
AA seq
DB search
MNKDPRSLRQLAVPLLFLALCVAVQRSDSAACHGCVGSKCDCSGVKGTKGERGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGPQGPSGPKGIRGPNGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGERGFSGSPGIPGQQGLPGPPGLPGAKGDPGDVISTNRFGEKGAVGLPGL
PGVPGTPGPPGLQGPLGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGEPGLPGPP
GPPGQVGEQKRPPETEIQRGDKGDPGLPGPPGDPGYPGPPGPSGGQKGDKGEPGESGKRG
KPGKDGDPGPPGFPGIKGDAGLPGPPGRDGERGLKGDRGYPGPPGLVIGGQAGGRVGPKG
EPGYPGAPGLKGDRGPTGLTGPPGAPGRPAIGGSGQPGSPGFPGERGQKGDSGAPGVSLP
GPPGRPGSSGLQGPQGPPGPPGFSSAGQNCIPGEPGRPGVQGERGYSGQTGQKGEKGETC
VNCFGGTSAVQGPPGPPGQPGFPGPPGSLGIKGDRGFPGTPGSVGASGIPGPQGAPGFPG
QKGDPGDAITVSGIRGEKGDSGFPGPPGLPGLDGRPGRDGQPGAPGSKGAPGSLLVKGER
GTPGEPGAPGIPGDRGPPGSPGFGPQGPSGEKGIQGVSGRPGAPGAPGTKGEPGLTVAEK
GLPGPRGQDGEPGLPGAPGSPGQPGQPGFPGLPGGKGDPGLPGIGLPGPPGAKGFPGIPG
QPGAPGGPGRPGVDGLPGQPGLSGPKGEPGFGLPGPPGLPGVPGSKGFPGPKGDPGFPGS
SGSPGRSGFDGVPGPKGEPGTPGTPGGRGPPGPPSLGSLGPPGPPGPPGLMGPPGEKGFP
GSNGEKGDPGPPGLDIPGLPGDRGSPGFPGSPGSIGPPGPPGGPGRDGLPGLPGQKGDMG
PMGSPGPSGGPGGPGGPGAPGLKGEPGFPGRDGGPGGPGNKGERGDPGVQGPPGTSLPPA
VVKGAKGDSGLPGAPGFPGQKGIPGLPGDPGLSGSDGRPGLPGPPGPKGDSGIPGGPGGS
GAPGQKGSMGEMGFPGPAGQKGLPGQPGRPGSPGQSGAPGFPGAKGDPGSTGVGPPGQPG
QKGDPGQPGFPGNSGLKGTSGSPGLPGLPGGPGVKGDPGLPGFQGSPGIPGPKGLDGGPG
APGLTGAPGRPGEPGRPGASGLPGDKGQAGRDGIPGPAGVKGEPGLPGFGGPGPAGLPGL
PGAKGDPGLPGPSGSPGFPGSKGEAGFPGAPGTPGNNGPPGPPGLALQGPKGLQGPPGPP
GRAGPAGPPGPSGPEGPRGPPGSGGIKGEKGISGAPGQPGFLGQKGESGVPGFPGPSGLP
GAPGIKGDIGLPGVPGFPGPKGDSGLPGGNGLPGDPGDIGLTGPPGDPGIPPAPIVVKGE
RGPPGPQGQPGSRGSAGSPGRDGLPGQPGSPGDPGSEGPPGFSGPPGRKGDNGPAGQPGQ
RGYPGPPGSDGPQGPPGLPGTASVAHGFLITRHSQAQEVPICPDGTNPIYDGYSLLYVQG
NERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITG
ESIKPYISRCSVCEAPAMVIAVHSQTIQIPSCPSNWEALWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPTEMFRKPQSETLKAGNLRTR
VSRCVVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacccgaggagcctgcgacagctcgccgtgcctctgctcttcctcgccctg
tgcgtcgcagtgcagcgatccgactctgcggcgtgccacggatgtgtgggatccaaatgt
gactgcagtggcgtgaaaggaaccaagggtgaacggggtttcccaggtctcaccggacag
ccaggagtcccaggattccccggacccgaaggccccatcgggcccagaggagagaagggt
agtgacggacctcaaggaccgtctggtccaaaaggaattagagggcctaatggattgcca
ggatttccaggcacaccgggacttccaggtctgccaggtcaggacggacctccaggcccg
agaggagtgccgggttgcaacgggacaaagggtgaaaggggtttctcaggaagtccagga
atccccggacagcaaggactaccgggtccacctggtctgcccggagcaaagggagaccca
ggtgatgtgatctccaccaatcgtttcggagagaaaggagcggtgggcttgcccggattg
ccgggagttcctggcactcccggtccccccggtttgcaaggtccgctcggccctccagga
cccagaggctatgagggtcgtccaggtcctccgggtcctcctggacctaagggaaacatg
ggtttgaacttccaaggacccaaaggagagaagggtgagccaggtttgccgggacctccg
ggtcctccaggacaggtgggagaacagaagaggccacctgagacggagattcagagagga
gacaagggtgacccaggacttcctggccccccaggtgatccaggctacccaggacctcct
ggtccctcgggtggccagaaaggagacaagggcgaaccaggagagtcaggcaaacgaggc
aaaccaggcaaagacggcgaccccggtcctccgggcttccccggaatcaaaggagatgca
ggcttgccaggtcctccaggcagggatggagagagaggtctgaaaggagatcgtggatac
ccaggcccaccaggactggtgattggtggacaggcaggaggccgggtcggccccaaaggt
gagcccgggtaccccggagcacctgggctcaaaggagatcgaggaccgacaggtttaaca
ggacctccgggagcaccgggacgtccagccatcggtggtagtggtcagcctggatctcca
ggcttcccaggagagagaggtcagaagggagactctggtgctccaggggtctctttgcca
ggtcccccaggacgtccaggatcttctggtctccagggaccacaagggccccctggacct
ccaggtttttccagtgcaggacaaaactgtatccctggagagcctgggcgtcccggcgtg
cagggagagagaggttactcgggacaaacgggccagaaaggtgagaagggcgaaacctgc
gtgaactgctttggtggcaccagtgccgtccaaggacccccaggacctcctggacagcct
ggattccccggacctcctggcagcctgggaatcaaaggagacagagggtttccaggaaca
cctggttccgttggcgcctctggcatccccggtcctcaaggagctccaggattccccgga
cagaagggtgacccaggcgatgccatcacagtcagtggtataaggggagagaagggtgac
agtggctttcctggaccacccggtctgcctggtctggacggtcgacccggtcgtgatggg
cagcctggtgctcctgggtccaaaggagctcctggctctctgctggtgaaaggagaacga
ggaacccccggtgagccaggtgcccctggtattccaggggacagaggtcccccaggttcc
cccggctttggacctcaagggccttcaggagagaagggtattcagggcgtctcaggaaga
cctggagctcctggcgcacctggtactaaaggtgaaccaggcctgacggtggcagagaaa
ggcctaccaggacccagaggacaggatggcgagcctggactgcccggtgcaccaggtagc
ccaggtcaacccggacagcctggtttcccgggtttaccaggagggaagggtgaccctgga
ctcccaggcattggactccctggacccccaggagctaaaggattcccaggtattcctggc
cagccaggagctcctggaggaccaggcagaccaggcgttgatggactccccggccagcct
ggactttccggacccaagggtgaacctggctttggacttcctggcccacctggtttaccc
ggtgtacctggatctaaaggcttccccggaccaaagggagatcctggtttccctggcagc
tctggttcaccaggacgatctggattcgatggcgtcccaggacccaaaggtgagcctggt
acacctggtacccctggaggtcgtggcccacctggacccccctcccttggctcattgggg
cccccaggccccccgggacctccaggcctaatgggaccaccaggcgagaaaggattccct
ggatcaaatggagagaaaggagaccccggccctccaggtctagacatcccaggtctgcca
ggagacagaggaagtcctggtttcccaggttccccaggatcaatcggacccccaggacct
cctggaggacctggacgggatggcctgcctggactgccaggtcagaaaggagacatgggt
cccatgggatctccaggaccttctggaggaccgggaggcccaggaggacctggcgcgcct
gggctaaaaggtgaacccggattcccaggtagagatggtggacccgggggtcctggcaat
aaaggagagaggggtgacccaggtgtccagggacccccaggaacctccctcccgccagca
gttgtaaagggagccaaaggagattcaggactaccaggtgcaccaggttttccaggtcag
aaaggcatccccggtctccccggggacccaggactgtcaggatcagatggtcgccctgga
ctccccggaccaccaggtcctaagggagattctggcatcccaggaggcccaggtggttct
ggagctccaggtcaaaaaggcagcatgggagaaatgggatttccaggaccagcagggcag
aagggtctaccaggtcagccagggcggccaggatccccggggcagtcaggagcacctggt
ttccccggagccaagggtgatccaggttctactggagtcggaccacctggacaacctgga
caaaagggtgacccaggacagccagggttcccaggaaattcaggactcaaaggaacttcg
ggatcacctggtctgccaggtttacctggaggaccaggcgtcaaaggcgaccccggcctc
ccaggattccaaggttctcctggtatcccaggtcctaagggtctcgatggtgggcccggt
gccccaggtctcactggagctcccggtagaccaggagagcctggacgaccaggagcatca
gggttgccaggagataagggtcaggctggtcgggatgggatcccaggaccggctggagtc
aaaggagagccagggcttcctggtttcggtggccctggtcctgctgggcttccagggttg
ccaggtgctaagggagacccaggtcttcccggtccctctggcagtcctggtttccctggc
tctaaaggagaggctggcttccctggtgcccctggtactccaggaaacaacggccctccc
gggcctccaggactggctctgcagggccctaaaggactccaaggtccccctggaccacct
ggacgagcaggtcccgcaggtcctccaggtccgagtggcccagagggtccccgtggcccc
ccaggaagtggcggcattaagggagagaagggcatttccggtgctcctggccagcccggt
ttcctcggacagaagggagagtctggtgttccaggattcccgggtccctctggtcttccc
ggagcccctggtataaagggagacattggtctgcctggcgttcccggattccctggacca
aagggagactctggactccctggtggcaatggtcttcctggagatcctggagatattgga
cttactggccctcctggtgaccccggtatacctccggctcctatcgtggtgaagggagag
cgaggaccccccggtcctcaggggcagcctggtagtcggggatcagctggttctcctgga
cgtgatggactcccaggtcaacctggtagccctggagatcctggttcagagggtccccct
ggcttcagcggcccgcctggcaggaagggagacaacggacccgctggccagcctggtcag
cgtggctaccctggtccccctggttcagacggtccacagggtcctcctggtcttccagga
acagcctctgtagcccatggcttcctcattacccgacacagccaggctcaggaggtgccc
atctgtcccgatggaacaaaccccatctacgacggctactccctgctgtacgtgcagggc
aacgagagggcacatggacaggaccttggaacagctggcagctgtctgcgcaggttcagc
accatgcccttcatgttctgcaacatcaacaacgtctgcaacttcgcctcccgcaacgac
tactcctactggctgtccactcccgagcccatgcccatgtccatggcccccatcactgga
gagagcatcaagccttacattagcaggtgttcagtgtgtgaagctccagccatggtgatt
gcagtccatagtcagaccatccagattccttcgtgcccttcgaactgggaggctctgtgg
ataggatactccttcatgatgcacaccagcgcaggagcagagggctccggtcaggccctg
gcctcccctggctcctgcctggaggagttccgcagcgctcccttcatagagtgccacggc
agggggacatgcaactactatggcaactcctacagcttctggctggccactgtggaaccc
actgagatgttcaggaagccccagtcggagactctcaaggcgggtaacctacggacacgc
gtcagccgttgcgtggtctgcatgaagaggacgtaa
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integrated database retrieval system
