Xiphias gladius (swordfish): 120797421
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Entry
120797421 CDS
T07311
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120797421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120797421
03009 Ribosome biogenesis [BR:
xgl03009
]
120797421
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120797421
Spliceosome [BR:
xgl03041
]
Complex A
U2 snRNP components
U2 related factors
120797421
Complex B
120797421
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120797421
Ribosome biogenesis [BR:
xgl03009
]
Eukaryotic type
90S particles
Helicases
120797421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
AAA_25
Motif
Other DBs
NCBI-GeneID:
120797421
NCBI-ProteinID:
XP_039997013
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All DBs
Position
LG12:8144222..8171980
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKKGSFDGRDHDRDRDRDRDERPKDRDRDRDRNRDRDGDVKSSG
VPNNPSACSGSFLKQTLLQQQINPFTNLPHTPRYYEILKKRLQLPVFEYRERFTDILMRN
QSFVLVGETGSGKTTQIPQWCVEMVRSMPGPKRAVACTQPRRVAAMSVAQRVADEMDVIL
GQEVGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDILLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEVLSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHLTLLNVYHA
FKQNHDSTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFSSRDYYVNIRRAL
VTGFFMQIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERITAKLSSKEYTQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgacaccgtttagatttaggtgacgattactcgtcgagtaaaaaaaagggg
tcctttgatgggcgtgaccacgacagggacagggacagagaccgtgatgaacggccaaag
gacagggaccgtgaccgggatcgaaaccgtgacagagacggggatgtgaagtcatctggg
gtgcccaacaacccttctgcatgcagtggaagcttccttaagcaaaccctcctacagcag
caaatcaaccctttcaccaacctgccccacacgccacgctattatgagatccttaagaag
cggttgcagctgcctgtctttgagtacagagagcgcttcactgacatcctgatgcgaaac
cagtcttttgtgctggtgggagagacggggtctggaaagaccacacagattcctcagtgg
tgtgtggaaatggtgcggtccatgccgggaccaaagagagcagtggcctgcacccagccc
aggagggtggcggccatgagcgtagctcagagggtggctgatgagatggatgtcatactg
ggccaagaggtgggctattccatcaggtttgaggactgcagctctgccaagactgtactc
aagtacatgacagatggaatgttgctgcgggaggccatgaatgatcccctgctggagcgc
tatggtgtcatcatcctggacgaggcccacgaacgcacattagctacagacatccttatg
ggggtcctcaaggaggtggtccgccagaggcctgacctcaaggtcattgtcatgagtgcc
acgctcgatgccggtaagtttcaggtgtactttgacagttgcccactgctaaccatcccc
ggacgcacacaccccgtggagattttctacaccccggaaccagagcgggactacctagag
gcggccatccggactgtgatccagatccacatgtgtgaggaggatgaaggggacattctg
ctctttctcactggacaagaggaaattgacgaagcctgcaagcgaatcaagagagaggtt
gacgacctggggcctgaagtcggggatatcaaaatcatcccattgtactccacactgcct
ccacagcagcagcagaggatctttgagccacccccacccaataaaccaaatggtgccatc
ggaaggaaggtcgtcgtgtcaacaaacatagcagagacatcccttaccattgatggcgtg
gtgtttgtaattgatcctggatttgccaagcaaaaggtgtataacccacgtattagagtg
gaatcccttttggttacagccatcagcaaggcctcagcccagcagagggcaggtcgtgct
gggcgaacacgcccaggaaagtgtttccgcctttacaccgagaaagcttacaaaacagaa
atgcaggacaacacatatccagagatcctgaggtctaacttgggctctgtggtgctacag
ctgaagaagctgggtattgatgacctggtgcactttgacttcatggatccaccagcccca
gagaccctgatgcgagccttggagttgctgaactacctggcagcgctcaatgacgacggc
gacctgacagagctgggctctatgatggcagagttccccctggacccccagctggccaag
atggtcattgccagctgtgaattcaactgttcgaacgaggtcctttccatcactgccatg
ttgtcagtcccacagtgcttcgtccgacccacggaagctaagaaggtggctgacgagtcc
aagatgcgctttgcccacattgacggagaccacctgaccctgctcaacgtctaccacgcc
tttaaacaaaatcacgactccactcagtggtgctatgacaattttgtcaactaccgctca
ctaatgtcagcagacaatgtccggcagcagttgtccaggatcatggaccgtttcagtctg
ccgcgacggagcacagagttcagcagcagagactactacgtcaacatccgccgagcgctg
gtcactggcttcttcatgcagatagctcacctggagcgcaccggccactacctgacggtg
aaggacaaccaagtcgtacagctgcacccctccactgtgctggaccacaagcctgagtgg
gtgctctacaacgagtttgtgctcaccaccaagaattacatccgcacgtgcactgacatc
aaaccagagtggttggtgaaaattgccccacagtactacgagatgagtaacttcccccag
tgtgaagctaagagacagttggagcgtatcactgcgaaactctcatccaaggaatacact
cagtactaa
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