Xiphias gladius (swordfish): 120798708
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Entry
120798708 CDS
T07311
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120798708 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120798708 (ndc1)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120798708 (ndc1)
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
120798708
NCBI-ProteinID:
XP_039999176
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Position
LG14:20900921..20910274
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AA seq
669 aa
AA seq
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MFSTDQSCWFIRKVICWRAAASIAWAVLLLPPITSVFVILSRFSLLHPIHTLSECLSLLT
SASAIFSFILLCGAILMVGFLNLEYYTVIPTIACSKIALLGQLLHPRQFVNSLVHCIMGM
IVAWCCAVTIGGRYETLGYQCTQSDGSPQMCLNEYHLIFLLAGAFVGFSHSLLGVIHNMN
YVSFHTVQQYKYLRFKGSLPLVLKCSATQALYSIRNYIVVYFFLGYIPRAWICKTLNLHL
NSSVQPLDSITGLLDLSLLYHLWISASFLLFTWYITLLLFRIFVTEVYSFPVQPSFTEDD
HHCLSKVLANKQPMILKFLALQDLALLSQHSPSRRFEVFSLSQPGGHAHNWNAISRECLS
LLADLTQRLVAYHDTVATNGRAKSLSTGSERKTSSEASVTSGTEDLMSPRPPLLMKTPAS
VLARSIAGGPQSPLTAPFTPDLDSPFASPALRRLTASAEQCSPWYGTVQSPHIMRRAPKL
WSTSTDSQVNGSPHPSPASVPSPKQEPSKPGLLAQFLQNRKEQVKNFLAKRVLIMYLFNK
LPEASSQALFADSQAHIWALEGLSYLVQASYSEDQFGVVQTTLPSILSCMLVLQEAVDRH
FKLPHASSKPVRSTSSMGDSSYKTLRFALRATLKTAIYRISTTFGHHLNAVQMSAEHWKR
LQQFLEYKE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgttttctactgatcaaagttgttggtttatccgcaaggtgatttgctggagagctgcg
gccagtattgcttgggctgtcctgctgttgccacccatcacatccgtttttgtaattctc
agcaggttcagccttctccaccccatccacacgttatcagaatgcttgtctttgctaaca
agtgcgagtgccatcttctccttcatcctcctgtgtggcgcgatcctcatggtggggttt
ctgaacctggagtattatacagtcatcccaactatcgcatgctcgaaaatcgccctgttg
ggtcagctgctccaccctcgtcagtttgtcaactccctggtccactgtatcatgggaatg
attgtggcttggtgttgtgccgtcaccatcgggggcagatatgagacgcttggctaccag
tgcacacagagcgatggttcccctcagatgtgtctgaatgagtatcacctcatctttctg
ctggccggagcctttgttggattttcccacagtctattgggggtgatccacaacatgaac
tatgtctccttccacactgttcagcaatacaaataccttcgcttcaagggatctctgcct
ttggtcttgaagtgcagcgccactcaagcactttactctatcaggaactacattgttgtg
tatttctttttgggatacattccaagagcatggatctgcaaaacactgaatcttcatttg
aacagctctgtccagcctcttgacagcataactggactgctggacctctccctgctctac
catctgtggatcagtgcaagcttcctcctctttacatggtacatcacactgctgctcttc
aggatctttgttactgaggtgtacagttttcctgtgcagccatctttcactgaagatgac
caccactgtctatccaaagttcttgcaaacaagcagccaatgatattaaagttcctagct
ctgcaggacttggctctgctgtctcaacactccccatcacgacgctttgaggtcttcagt
ctgagtcagccaggtggccacgctcataactggaacgccatcagtagagagtgtctgtct
ctgctggccgatctgacccagagacttgtggcctatcatgacactgtcgcaaccaatggc
agggccaaatccctgtctactgggagtgaaaggaagacttcatctgaagcgtcagtaacc
tcaggcacagaagatttgatgtccccgaggccccctctgctgatgaaaactccagcttca
gtcttagctcgctccattgctggaggccctcagagccctctgacggcaccgttcaccccc
gacctggacagccccttcgcttctccggccctgcggcgcctcactgcttcagcagaacaa
tgctcaccgtggtacggcacggtgcagagcccgcacatcatgaggagagcgccaaaactc
tggtccacctcaacagattcacaggtcaatggcagtccccacccatcccctgcctcagtt
cccagtcccaagcaggaaccctccaaaccaggtctccttgctcagttcctccagaacaga
aaagaacaggttaaaaatttcttggcaaagcgggtgctgataatgtatttgtttaacaag
cttccagaagcctccagtcaggctctctttgctgacagccaggctcatatctgggcttta
gaaggactctcttatcttgttcaagcctcctactcagaagaccagtttggggtcgtccag
actacattacccagcattctcagctgcatgctggtcttacaagaggctgtggatcgccac
ttcaagctgccccatgcctcgagtaagcccgtcaggtcgaccagcagcatgggagactct
tcttacaaaacgctgcgctttgctctcagggccacactcaagactgctatctacaggata
tccactactttcggccatcacttaaatgctgttcagatgtctgcagagcattggaaaaga
ctgcagcagtttctggagtacaaggaataa
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