Xiphias gladius (swordfish): 120798859
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Entry
120798859 CDS
T07311
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03013
Nucleocytoplasmic transport
xgl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120798859
03015 mRNA surveillance pathway
120798859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120798859
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120798859
5.6.2.5 RNA 5'-3' helicase
120798859
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120798859
mRNA cycle factors
Common to processing body (P body) and stress granule
120798859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120798859
NCBI-ProteinID:
XP_039999561
LinkDB
All DBs
Position
LG14
Genome browser
AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRMSNMYFQTHDQIGMIGTSPSPMTSLNI
PIPFNLVMPPIPPSGYMGQVNGPTTGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHGGG
NGGADRGGHLSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgtttctggacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgactttaccgattttaccctg
ccgagccagacccagacccaaggccagacccagagtcagctagacagccaggttaatggt
cctgacggggtgctacagaatggagacgaccctgtggtaaaagccagtcagttgctggca
gagctgaactttgaggaggatgaggaggacacctactataccaaggatcttcctgtacat
gcctgcagttattgtgggattcatgatccagcctgtgtggtctactgcaataccagcaag
aaatggttttgtaatggccgtggaaacacatctggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaacggtactg
gagtgctataactgtggctgtcgcaatgtcttcctgctgggcttcatccctgccaaggcc
gattcagtagttgtgttactgtgcagacagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtcaaaatcccctcagaacaagagcagctcagggcccgtcagatcactgcccagcag
atcaacaaactggaggaactctggaaggaaaatcccactgcgaccttggaggacctggag
aagcctggtgtggatgaggagccccaacacgtcctgctccgctatgaagatgcctatcag
taccagaacatctttggtcctcttgtgaagctggaagctgactacgataagaaactcaaa
gagtcccagactcaagacaacattacggtcagatgggacttgggactgaacaaaaagagg
attgcatatttcactcttcccaagacggactcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactatggtgatgagattgccatagagctaaggagcagtgccggggct
ccggtggagatcccacacaactttcaggttgactttgtgtggaaatccacttcctttgac
aggatgcagagtgccctgaagacatttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacatgaggtagaagatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgctcaaggcctacctgatcttaaccactcccaggtgtatgctgtgaagaca
gtgctgcagcgtcccctcagtctgatccagggtcctcctggcactgggaagactgtaacc
tctgccaccattgtctaccatctggctagacagggaaatgggccggtgctggtgtgtgct
cccagtaacattgctgttgaccagctgacagagaagatccaccagacaggactcaaggta
gtgaggctgtgtgccaagagcagggaagccattgactcgcctgtgtccttcctggctttg
cacaaccagacgcgtaacatggacagtatgccagagcttcagaagctccaacagctgaag
gacgagactggcgagctgtcctcctcagacgagaagcgctaccgagctctgagacgcact
gctgagagggagctgcttatgaatgctgatgtgatctgttgtacctgtgttggggcgggg
gatcctcgtctggccaagatgcagttccgctcaatcctgattgatgagagcacccaggcc
actgaaccagagtgcatggtgcctgtcgtcctgggggccaagcagttgattttagtgggt
gatcactgccagctgggtcctgtggtgatgtgtaagaaagcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttctggggatccggccaatccgtctgcaggtccag
taccgcatgcacccagccctcagtgccttcccctcaaacatcttctatgaaggctctctg
cagaacggagtcactgctgcggaccgtgtgaagaaaggctttgactttcagtggccgcag
cctgacaagccgatgttcttttacgtcacacaaggccaagaggaaattgccagctctgga
acatcctacctcaacaggactgaggcagccaatgtggagaagataaccacaaggttgctg
aaggctggagcaaaacctgatcagatcggcatcattaccccctacgagggacagaggtcg
tacctggtccagtacatgcagttcagtggctctctccataccaagctctatcaggaggtg
gagatagccagtgtggatgcctttcaaggcagagagaaagacttcatcatcctgtcatgt
gtgagggccaatgagcaccagggcatcggcttccttaacgatccccgacgtctcaatgtg
gcactcaccagggccaggtatggtgtgatcattgtgggaaaccctaaggccctgtccaag
cagcccctctggaaccacctgctgaactactacaaggagcagaaggtcctggtcgaaggc
cccctcaacaacttaagggagagcctcatgcagttcagcaagccacgcaagttggtcaac
accatcaaccctgggggtcgattcatgagcactgccatgtatgatgccagggaggccctc
attcctggatctgtttatgaccgcagcagcaatgggcgtatgtcaaacatgtatttccag
acccatgaccagatcggtatgattggcacaagccccagtcccatgacctccttgaacatc
ccgatcccattcaaccttgtgatgccccccataccgccctctgggtacatgggacaggtg
aatgggcccacaacaggccgtggtggaggcatgaaaggcaaggcaggcagtggaggagga
ggcgggactcgaggtggccgtcaaagaaatcgcggcaacatgggaaaccatggtggaggg
aacggaggtgcggaccgtggaggacacctgagcggcagccaggccagccaggacctgggc
tcccagcccttctcccaggggcctctgacacagggctacatcaacatgagccaaccgtca
cagatgagtcaacctgggctctcccagcctgaactctcccaggacagttacctaggagat
gagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgg
gcctaccaacatggtggtgtgactggactgtcccagtactag
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