Xiphias gladius (swordfish): 120799053
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Entry
120799053 CDS
T07311
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120799053 (rc3h1b)
04121 Ubiquitin system [BR:
xgl04121
]
120799053 (rc3h1b)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120799053 (rc3h1b)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120799053 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
120799053
NCBI-ProteinID:
XP_039999829
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Position
LG14
Genome browser
AA seq
1144 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGPGGLMPDEGLSLDVAVTRKPS
PLPNGSVAPSLPQLIARCTDTVPYELLRKPLKMDGGSPSAPGSPPDVLDPVPKPGMPLPP
HALAHPRMPADHLSGVKHMPVVPRSSPVYPQPQLTEMCYDTRPPTSASQYEPPQYPTGYP
YQQPPQYVPRDYIRNPPPPSESGPPYQDPYPGYGPPERTYQAPHSGPTFSYPHPSHYDRG
RHGTYTGPPPPPQPYPSQRDNMVRMSPAPLDVPPPSAGQANSLYHQEPSARDRYAPDGYY
PPGAQAPPTRAYVRGPSYSGPQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLSHPF
PSDYPPEYGEENSKSIVKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVSGTMEMMN
VEAKGLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMAS
TPQNPNSKHMAMPEYTYGSHGGWGGASYPSHQTASSSQGHFSERLPMAAPDREQLKIELQ
QVNQQINQQTQMHSMEAASNSLLLQREASALAGQPVQPSQGQVAAAAAAAAAAAAQQQQQ
PKWPAGGASATAVSSEQLSLELHQVEREIGKRTREMAMENQVVHDVQQYKMKPAENGQPE
HKTQLEEISLALGEVSNGSSSLQESAVGGSMLSLTNKTSALSLCSDPGATGSEMQKNGVV
HSCS
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccaatctgcacacagaca
tttgaggagactgttcgcaggcccatcagcctgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcttgtccctttgaccagacagccatcagcacagac
attgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaggactcacagcattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacacccgaggtgtgggt
ctgagcagcacggcccagagcatgctgagtcgaccaatgcagaggaaactggtaactttg
gtccactgccagctggtagaggaggagggtcgcgttagagccatgagagctgcccgctct
ctaggtgagcggactgtcaccgaactcatcttacagcaccagaatccacagcagctctcc
tccaatctgtgggccgctgtccgtgcacgaggatgtcagtttctcggcccagcaatgcag
gaggaagctctaaagttggttcttcttgctctagaggatggttctgctctttccaggaag
gtgttagttctctttgtagtccagaggcttgagccacgcttcccacaggcctctaaaact
agcataggtcatgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaaacgt
gatgaagattcatccctgatgcagctgaaagaggagtttcgtacttacgaggctctgcgt
cgcgagcatgactctcagattgttcagattgccatggagggagggctgcgcattgcacct
gaccagtggtcgtctctgttatatggagatcagtctcacaagtcacacatgcagtctatc
atagataagctgcagaccccggcatcttttgctcagagtgtccaggagctgacgattgcg
ctgcagaggactggcgacccagccaacctcaacaggctgcggccccacctggaactactg
gccaacattgatcccagtcctgatgccccccctcctacatgggagcagcttgagaagggg
ttggtagcagtgaagacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgatcctcaacagcctcctcagcacagcaagtacaagacatacatgtgtcgt
gacatgaagcagaaaggaggctgtcctcgtggagccagctgcacctttgctcactctcag
gaagaactggagaagtatcgtaaaatgaataagcgtctggcagctcgcctccctggccca
ggagggctcatgccagatgagggcctttctcttgatgtagcagtgacccggaagccttcc
cccctccccaatggcagtgtcgcaccctctttgccccagctcattgcccggtgcaccgac
acagttccatacgaactgttgcgtaaacccctcaagatggatggagggagtcccagtgcc
ccgggatcaccacctgacgtcctggaccctgtgcccaaacccggtatgcctctgccaccg
catgccctggcccacccaaggatgccagcagaccacctctctggggtgaagcacatgcct
gtggtacctagaagttctccagtgtacccccagccgcagctcactgagatgtgctatgac
actcgcccaccaacttctgcttctcagtatgagcccccccaataccccacagggtacccc
taccagcagccgccacagtatgttcctcgggattacatccgtaaccctcctccccccagt
gaatcaggacccccctaccaggacccctaccctggctacggccctccggaacgcacctac
caggcccctcattctggcccaaccttctcctaccctcacccttcacactatgacaggggt
cgccacgggacctacactggtccaccacctcccccacagccttacccatctcagagggat
aacatggtcagaatgagtcccgcgcctcttgatgttcccccgccatcagcaggacaggct
aactcactttaccaccaggagcccagtgcccgggataggtatgcaccagatggctactat
ccaccaggtgcccaggctccacctacgagggcttatgtcaggggcccatcatatagtggt
ccacagcccagtctggactatctgcaccgacgacgtcaggagctgttatcccagctggag
gaaaggaaggtcatctcacctccaccatttgctgcctcccccactctttctcatcccttc
cccagcgactaccctcctgagtacggtgaagagaactccaaaagcattgtgaaatgcaga
gagcccgactatgcagggcaatactctccctggtcttgtgaaaccattggctcctacatt
ggtacaaaggatgccaaacccaaagatgttatggtttctggtaccatggagatgatgaat
gtggaggctaagggtctgagggaaccatcgctggaggctcctcggaggggtgcagaagtc
aaagacgatgaccccattatcccgtttggcccccagcccacagtatcacgttttggtgcc
atttcccgcacctcaaagacaggctaccaaaccaccggccctgtgcaggctatggcctct
actccccagaacccaaactctaaacacatggccatgccagaatacacatatggaagtcat
ggaggatggggtggagcttcatacccctcccaccagactgcctcctcctctcagggacac
tttagtgagcgcctaccaatggcagccccagacagagaacagttaaaaattgagctgcaa
caggtcaaccagcagatcaaccaacagacccagatgcacagcatggaggctgccagtaac
tctttactgctgcagagagaggccagtgcactggcaggtcagcctgtgcagcccagccag
ggccaggtggcagcagcagcagcggcggcggcagcagcagccgcccagcagcaacaacag
cccaagtggccagcggggggagcaagtgcaacagctgtctccagcgaacagctaagcctg
gagctccaccaggtggagagagagatcggcaagaggacccgagagatggctatggaaaac
caagtagtgcatgatgttcagcagtacaagatgaaacctgcagagaatggacaaccagag
cacaagactcagctggaagaaatctccctggctcttggtgaggtgtcaaacggctccagc
agtctgcaagaaagtgcagtgggcgggtccatgctgtcactaaccaataagacgtctgcg
ttgagtctgtgttctgatccaggtgccactggttcagagatgcagaagaatggcgttgtc
cattcctgctcttag
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