Xiphias gladius (swordfish): 120799089
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Entry
120799089 CDS
T07311
Symbol
tnr
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120799089 (tnr)
04518 Integrin signaling
120799089 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120799089 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120799089 (tnr)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120799089 (tnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_PBP1
Pur_ac_phosph_N
FN3_Tor_3rd
EGF_Tenascin
EGF_2
Fn3_VIN3
Fn3_Dep-1_2nd
Interfer-bind
DUF4998
Fn3_ROS1
DUF7949
EGF_PEAR1L
EGF_integrin
Motif
Other DBs
NCBI-GeneID:
120799089
NCBI-ProteinID:
XP_039999906
LinkDB
All DBs
Position
LG14
Genome browser
AA seq
1378 aa
AA seq
DB search
MPLAQQYHRATVPSAGWILVLALFLVLQVATHAAPSGDNKLVRTTRVRRQTPGGDQPDSS
ANQTLREQPVVFNHVYNINVPLESLCSVDLDASAPPAPGEGSRAELGSRPPVEGPMEPTG
PTEYTEQTLDADSQVTFTHRINIPKAACGCAAATTIQQLATRVEMLEREVSLLRAQCGSG
CCGESSAMGHLDFVPGCSGHGSFSFDLCGCICEEGWTGKNCSEPRCPDDCSGQGVCVEGE
CVCDRDFGGDNCSEPRCPSDCSGRGLCIDGECVCEESFTGEDCMVGRCLNDCSDQGLCVN
GTCQCRPGYVGEDCSLVYCANNCSKRGVCKEGFCVCQDGFAGDDCNSVAPVVNLMVRGVT
DRTIDLEWEGSVVLTDYLLTYTPSSPGGVQLEIRIPGNTTTCTISGLEAGMEYNINVFAV
INNTISIPDSITVWTYLSNPDGLVFKSITETSVEVQWQPFYYSFDGWEINFIPKDNDGGM
TAQLPSTITSFVQTGLRPGEEYTVNLVALRDQGRSQPVTATVTTLIDGPTQLIVRDVSDT
VAFVEWTPPKAKIDQIVLRYGLVGGEGPRTTFRLQPTLSQYSLQVLRPGSRYEVSVRGVR
KGNESGSISTEFTTEIDAPKNLRLVSKTSTSLELEWDNSEAEVEGYQVVYSTLAGDQYDK
VIVPRNEGATTKTTLTDLLPGTEYGIGISAMKGSNQSTPATTNARTSLDVPTDLTVTAST
DNTITLVWGMVQGPIDHYKVTYTSSSGVTTELTVPKDVTTTTLTDLDPGTEYTITVAARR
GRQQSTAATIDAFTGIRPVTHLYLSEVTSDSVSVAWSAPAPPADLFILSYSSSDGTDTSK
VTLDGSKTRSLVQGLLPSTHYTISLITIQGDVTSEPITASLTTGMDPPKEMTVSDVTEDA
VTVSWIKPLAPFEYYKLSYQSARGRVDSVVIDSDVTNYTLSSLFPATEYEISLNAVRGSQ
ESKVVSTSFFTAMDMPAELTALNITPQGALLRWNPPLSSVDNYVLTLTHNQVTADTFLVE
GNKQEHQLSNLKPSTTYSVALYATKGPLTSGTVITNLQTPMDAPLNLTASEVNHRSALIS
WQPPIAEIDNYMLTYKSSDGSRKELILDAEDTWIRLEGLAETTEYTVKLQAARGLDTSAI
VSTTFTTGSRLFATPQNCAQHLLNGETLSGVYTIYINRDPSQGVQVYCDMTTDEGGWIVF
QRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDHIQRIASQGRYELRIDMRDGQESVYAN
YDKFSIGDARNLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCALSYKGAWWY
KNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKRRRSAPV
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgccactggcacagcagtatcacagggccactgtgcccagtgcaggctggatcctggtt
ttggctctgtttcttgttctacaggttgccactcatgctgctccatcaggagacaacaag
ctggttcgtaccaccagagtgaggagacagaccccagggggggatcaaccggattcctca
gccaaccagaccctccgggagcaacctgtggtctttaaccacgtctacaacatcaatgtt
cccttggagtctctgtgctctgttgacttggacgcctcggcacctcctgccccgggtgaa
ggttcacgtgctgagctggggtctagacctcctgtggagggtccaatggaaccaactgga
ccaacagaatacactgagcagacgctggatgctgacagccaggtcacatttactcaccgc
atcaacatcccaaaagctgcatgtggttgtgcagcagcaaccacaatccagcagctcgcc
acaagggtggagatgctggagagagaagtttccctgctcagggctcagtgtggatctgga
tgctgtggggagagctcagccatgggtcatttggactttgtccccggctgcagtggccat
ggcagcttcagctttgacctctgtggctgcatctgcgaggaaggctggaccggcaaaaac
tgctctgagcctcgctgcccggatgactgctccggccagggggtctgtgttgaaggggag
tgtgtgtgcgaccgtgactttggaggcgacaactgttcagagccgcggtgcccttcagac
tgctcgggccgtgggttgtgtattgacggggagtgtgtgtgcgaggagtccttcaccggt
gaggactgcatggtcgggcgatgtctcaacgactgctcagaccaggggctgtgtgtcaac
gggacgtgccagtgccgccccggatatgtgggagaggactgctcgctggtgtactgtgct
aataactgcagcaagaggggagtctgcaaggagggtttctgtgtgtgccaggatggcttt
gctggagatgactgcaactctgtggcacctgtcgtgaacttgatggtccgaggggtgact
gatcgaactattgacctggagtgggaaggctcagttgtgctgacagattacttgttgacc
tacacaccaagcagccctgggggtgtacaactagagataaggattccaggcaataccacc
acctgcactatctcaggcctcgaagcaggcatggagtacaacatcaatgtgttcgctgtc
attaacaacactatcagcatccctgacagcattactgtttggacctatctctccaatccg
gatggtttagttttcaaatccatcacagagacgtcagtggaggtccagtggcaacccttc
tactattcctttgatggatgggagatcaacttcatccccaaggacaatgatggagggatg
actgcacagctgcccagcaccatcacttcctttgtgcagactggtctgagaccaggggaa
gagtatactgttaacttggtggcgctccgagaccagggtcgaagtcagccagtcactgct
actgtcacaacattaattgatggccccactcagttgatcgtgcgggatgtgtcagacact
gtggcgtttgtggagtggacaccaccgaaagcaaagatcgatcaaatcgtgttgcgttat
ggccttgtggggggtgaggggccgcggaccaccttccgcctccagcccacactcagccag
tattccctgcaggttctgcgtcctggttcgcgttacgaggtgtctgtcagaggtgtcagg
aaaggaaacgagagcggatccatttccacagaatttacgaccgagatcgacgcccccaag
aacttgcggctcgtgtctaagacctccacctccctcgaacttgaatgggataacagtgag
gctgaggtggaaggctaccaggtggtgtacagcactttagcaggagatcagtatgataaa
gtcattgtgccacgaaatgaaggagccaccactaagaccactctcacagacctgctgcca
ggcacagagtacggcatcggcatctccgccatgaaaggtagcaaccagagtacaccggca
acaacgaacgccaggactagtctggatgtgcccacggatttaactgtgacagcctccaca
gacaacaccatcactctggtgtggggcatggtccagggccccatcgaccactacaaggtc
acctacacatcctcctctggcgtcactactgagctgacagtgcctaaagatgtaaccacc
accaccctgacagaccttgaccccgggactgagtacaccatcactgtagcagcaagaaga
ggaagacagcagagtactgcagctaccatagatgccttcacaggaatcagacccgtaacc
cacctctacttgtcagaggtgacttcagactcagtgtcagtggcgtggagcgcaccagca
ccgcctgctgacctcttcatcctgagctacagctcttctgacgggactgacacctctaag
gtgacgctggacggctccaagacgaggtcactggtccaggggttgctgccgtccactcat
tacaccatcagtctaatcacaattcagggggatgttacctctgagcctataacagcatca
ctcactacaggcatggacccaccaaaagagatgacggtgtcagatgtgaccgaggacgca
gtgactgtctcctggatcaaaccactggctccgtttgaatactataagttgtcctaccag
tcagccagaggtcgtgtggacagcgtggtgattgacagcgatgtgaccaactacaccttg
tccagtctgtttcctgctacagaatacgagatcagtctcaacgctgtcagagggagtcag
gagagcaaagtggtcagcacctccttcttcacagcgatggacatgccagctgagttgaca
gccctcaacatcactccacaaggagccctgttgaggtggaatcctcctctgtccagtgtc
gacaactatgtgctgaccctcacacacaaccaggtgacagctgatactttccttgtggaa
ggcaacaagcaggagcaccagctatccaaccttaagccaagcaccacctattctgtagcc
ctctacgccaccaaaggacccctcaccagcggcacagtcatcaccaacctccaaacacct
atggacgcacccctcaacctgacagccagtgaagtgaatcaccgcagcgctctcatctcc
tggcaaccgccaatcgcagaaattgacaactatatgctcacctacaagtcaagcgacggc
agccgtaaagagctgatcctggatgcagaagacacatggattcgattggagggactggct
gagaccacggagtatactgtcaagctccaggcagcaagaggacttgacaccagcgctata
gtctccactaccttcactacagggagccgtctatttgcaacacctcagaattgtgcccaa
cacctgctgaatggagagacgctaagtggtgtctacaccatttacatcaacagagacccc
agtcagggagtgcaggtgtactgtgacatgaccactgatgaaggaggctggattgtgttc
cagcgtcgtcagaacggcctgacagacttttccaggaagtggagtgactatcgggttggc
tttggaaacttggaggatgagttctggctcggtctagaccacatccagaggattgcttct
cagggccggtatgagctgaggattgacatgagggatggacaggagtcagtctatgccaat
tatgacaaattctccatcggagacgcgagaaacctctacaagctcaggataggagagtac
aatggaaccgctggtgactctctgagctaccaccagggccggcccttctctacaaaagac
agagacaatgacatagctgtcactaactgtgccttgtcttacaaaggagcctggtggtac
aagaactgccaccgggccaacctcaacggaaaatacggcgaatccagacacagtcagggt
atcaactggtaccactggaaaggccatgagttctctattccctttgtggagatgaagatg
aggccattcaacttccgaagcatcagcagcaagaggaggcggtctgcccctgtataa
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