Xiphias gladius (swordfish): 120799359
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Entry
120799359 CDS
T07311
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03030
DNA replication
xgl03410
Base excision repair
xgl03420
Nucleotide excision repair
xgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120799359 (lig1)
03410 Base excision repair
120799359 (lig1)
03420 Nucleotide excision repair
120799359 (lig1)
03430 Mismatch repair
120799359 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xgl03032
]
120799359 (lig1)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120799359 (lig1)
Enzymes [BR:
xgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120799359 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
120799359 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120799359 (lig1)
DNA replication proteins [BR:
xgl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120799359 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120799359 (lig1)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120799359 (lig1)
NER (nucleotide excision repair)
Other NER factors
120799359 (lig1)
MMR (mismatch excision repair)
Other MMR factors
120799359 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
120799359
NCBI-ProteinID:
XP_040000412
LinkDB
All DBs
Position
LG14:complement(23457598..23506308)
Genome browser
AA seq
1011 aa
AA seq
DB search
MQRSIASFFQPKSKDKDFQKKTTDEPVKKPVKSPLKVQNGVPEADSPIKKVAKRSRQILD
SDDDDEAPAVKEQVATKGQGEKEAPVKTEKDDVFKAVPTPLSPPPAPATPLTPATPATPA
SSTSPGTPSTPNSVTPPGIVKRKTARKMFPKRKLDESRSDSESHKEEAEAKEEEGRQNKR
PRVETTASSAGNTSEPMEQGAKEEKVEKAVPGRPSPMDEVEQEEREGEMAKQEGGGWKKN
SDEREKMKEARKKEKEAKEKTDDERGPAVAKEEVVEKDTREGKESPKSQTAKKQKEAKEQ
RDKEPAKKAPISSFFAPRKAAVKTEKPDKNEGEKKTHAERKSSAEEIKGTKGESASGATD
YDPSRPGYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPD
DLLCCVYLCLNQLGPAYLGMELGVGDTVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAES
SRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRS
LAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQ
TYCEMPNYDILIPVLQKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTC
EYKYDGERAQIHILDSGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSEAVAW
DREKKQIQPFQVLTTRKRKDVDATEIKVQVCLYAFDLLYLNGESLVRQPLCRRRALLKES
FSEVEGEFVFARYIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKL
KKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIGTGFKDEDL
EQHYKFLKDHILPKPRAYYRADPSAEPDVWLDAVQVWEVKCADLSLSPIYKAAMGMVDPE
KGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADQEDYY
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagagcaaagacaaggattttcagaag
aaaaccacagatgaaccagtgaaaaaaccagttaagagccctctcaaggtgcagaacggt
gtcccggaggcagattcacccatcaagaaggtcgccaagcgcagccgtcaaatcctggac
agcgacgacgacgacgaggcaccagctgttaaagagcaagtcgccaccaagggacaagga
gagaaagaagcccccgttaaaacagaaaaggacgatgtgtttaaggcagttcccaccccc
ctgtctccaccgccagccccagccacccctctaacacccgccactccggccaccccggcc
tcttcaacttcaccagggacccccagcaccccgaactccgtcactccgcctggaatcgtt
aaacgcaagactgcgaggaagatgttccccaagaggaagcttgatgagagcaggagcgac
agcgagagtcacaaagaggaggccgaggccaaggaggaggagggtcggcaaaataaacgt
ccccgtgttgagaccactgccagcagtgcagggaacaccagtgaacccatggagcaagga
gcaaaggaagaaaaagttgaaaaggctgtgccaggccgacccagccctatggatgaggtg
gagcaagaagaaagagaaggagaaatggccaagcaggagggaggcgggtggaagaagaac
tctgatgagagagaaaagatgaaggaagcgaggaaaaaagaaaaagaagcaaaggagaag
acagatgatgagagaggccctgccgttgccaaggaggaggtggttgaaaaggacacgcga
gagggaaaagagagcccgaaaagtcaaacggcgaaaaagcagaaagaagcaaaagagcag
agagataaggagccggccaagaaagcccccatcagcagtttctttgctcccagaaaagct
gcagtgaagacagagaaaccagacaagaatgaaggagagaaaaagacacatgcagagagg
aagagttcggcggaggagattaaaggcacaaagggcgagtcagcttcaggagcgacagac
tacgatccgtccaggccaggctatcatccggtggaccacgcctgttggaagcagggccag
aaagtgccgtacctggcggtggctcgcacctttgagaagatcgaagaggactctggcagg
ctgagaaacatcgagacgctgtcgaacctgcttcgctctgtgctgctgctctctccagat
gacctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcctacctggggatg
gagcttggcgttggagacacggtgctgatgaaagctgttgctcaagcaactgggcgacaa
ttggacaaaatcaaagcagaggcgcaggagaaaggagatttgggcctagtggccgagagt
tcccgtagcaaccagcgcatgatgttccaaccagccagtctgacagcagggggcgtgttc
aggaaattgaaggaaattgccagcatgagtggaaactcggccatgaataagaaaatcgac
atcatcaaaggcctctttgtggcgtgccgcttttccgaagcccgctacatagtcaggtcc
cttgctgggaagctgcggataggcctggccgagcagagtgtcctatcagcactcagccag
gctgtgtgcttgaccccacctggacaaggtttccctcctgctgtgatcgacgcagggaag
gggatgagcgctgagagcaggcgggcctggatcgaagagaagagtctcattctcaaacag
acttactgcgagatgcccaattacgacatccttatccctgttctgcagaaagagggcata
gaccagctacccaatcactgcaagctcactccaggtgtaccgctgagacccatgttggct
caccccacaaaaggtgtcggcgaggtgatgaagaagtttgacgaggcggcgttcacctgc
gagtacaagtacgacggcgagcgtgcgcagattcacattctggacagcggtgaggttcga
atattcagccgcaaccaggaagacaacaccagcaagtaccccgatatcatctctcgcatt
cccaaggtgaagaaggactcggtggtatcctgcgtcctggactcggaggctgttgcctgg
gaccgggagaagaaacagatccagcccttccaggtccttaccacccgtaagagaaaggac
gtggatgccacggagatcaaagtgcaagtgtgtctgtacgcctttgaccttctctacctc
aatggcgagtccctggtgcgacagccgttgtgtcggcgtcgggctctgctgaaagaaagc
ttctcagaagtggagggagagtttgtgtttgcccgatacatcgactccgacaacaccgac
accatcgccgagttcctggagcagtctgtccgagattcctgcgagggcctgatggtgaag
actctggagaaggatgccacctatgaaattgccaaacgctctcataactggctcaagctg
aagaaggactacctagacggggtgggtgacacagtggacctgtgtgtgatcggcgcctac
ctggggaaaggcaagaggacgggcacctatggaggcttcctgctggcgtgctatgatgat
gagaacgaggagttccagtccgtctgcaagatcgggacaggcttcaaggatgaagatctg
gagcagcattacaagttcttaaaggaccacattctgcccaagccacgtgcctactaccgc
gccgacccgtcggcagagcccgacgtgtggctcgacgctgtgcaagtttgggaagtgaag
tgcgctgacctgtcgctgtcgcccatctacaaggccgccatgggaatggtggatccagag
aagggcatttctctgcggttcccccgcttccttcggatcagagacgacaaaaaaccagag
gacgccacgaccggagctcagattgcggatttgtacaagaagcagcagcagattcagaat
cagggggagaaagctgaccaagaggactactactga
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