KEGG   Xiphias gladius (swordfish): 120799613
Entry
120799613         CDS       T07311                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl03013  Nucleocytoplasmic transport
xgl03015  mRNA surveillance pathway
xgl03040  Spliceosome
xgl05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120799613
  09122 Translation
   03013 Nucleocytoplasmic transport
    120799613
   03015 mRNA surveillance pathway
    120799613
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    120799613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xgl03019]
    120799613
   03041 Spliceosome [BR:xgl03041]
    120799613
Messenger RNA biogenesis [BR:xgl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     120799613
    TREX complex
     120799613
Spliceosome [BR:xgl03041]
 Complex C
  Other components
   EJC/TREX
    120799613
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    120799613
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5 FYTT RRM_3 RRM_occluded
Other DBs
NCBI-GeneID: 120799613
NCBI-ProteinID: XP_040000769
LinkDB
Position
LG15:29135565..29139158
AA seq 254 aa
MADKMNMSLDDIIKLNKKGGSGRGGRSSGSGGSSGWAGGSSRPVRSRQNNFNRERNNRST
PYTRPRELPDKWQHDMFEEHVSGRQVQSAGAERSVENSGKLLVSNLDFGVSDSDIKELFA
EFGALKKASVHYDRSGRSKGTADVHFENMADALKAMKHYNGVPLDGRPMKIQQVTSEVNA
HSRQSTQSSNRGFDRSRLGQPKTERRERGEKRQGGGSGGFRGRGRGGGNRPQLSAEELDA
QLDAYNAKFQMDTS
NT seq 765 nt   +upstreamnt  +downstreamnt
atggctgataagatgaatatgtctctggacgacattatcaagctgaacaagaaaggaggc
agcggccgaggaggaagatcatccgggtcgggtggaagttcaggttgggccggtggatcg
tcgaggccagtgcggagtcgacagaataacttcaaccgtgagagaaacaacagatccaca
ccgtacaccaggcccagagagttaccagacaaatggcagcatgacatgtttgaggagcat
gttagtggacgccaagtacaaagtgctggggctgaaagaagtgtagaaaatagtggcaag
ctgctggtttccaatctggactttggcgtctctgactcagatatcaaggagctgtttgca
gagtttggggcattgaaaaaggcgtctgtacactatgaccggtccggtcgcagtaaagga
acagcagatgttcactttgaaaatatggcagatgcactaaaagccatgaagcactataat
ggtgtcccacttgatggacgccccatgaaaatccagcaagtgacgtcagaggtcaatgca
catagtagacaatccacacaaagttcaaacagagggtttgacaggagcaggctcggtcaa
cccaagactgaaaggagggaacggggtgaaaagaggcaaggtggcggcagtggaggtttc
agaggtcgtggaagagggggtgggaacagaccccaactttctgcagaagagttggatgcc
cagttggacgcttacaatgccaagtttcagatggacaccagttag

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