Xiphias gladius (swordfish): 120799894
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Entry
120799894 CDS
T07311
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120799894 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120799894 (parn)
Enzymes [BR:
xgl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120799894 (parn)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120799894 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
120799894
NCBI-ProteinID:
XP_040001317
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All DBs
Position
LG15:complement(8083318..8093889)
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AA seq
684 aa
AA seq
DB search
MEVTRKNYKDCLNTVYSAIEDADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQAKSKYVTKPFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRHQHANGVGTPTYISPSSSKGPAHVPEEHKD
FINRVVEKVEALFTNSEKTLDLDPCTGFQRKLIYQTLNWKFPKGLHVETMETEKKERYIQ
VSKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAVSKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKESPFKPPQV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQEKEKFGQTAKTWGEDGWVKPHY
TTSASAGGFGYSRGVRKRSISPVQGEQGSGEPLIADGWSHFSYPDSTGSKKMKTDDTSGK
ANAEAVESKTSEGWLKTTDASDSAGLSPVPDEESHEGTDPGSDAEGTVTWQQAPTVHGRK
GQKNKKKSEAAESTTSLFEVPEVW
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaaagaattataaagactgtttaaacacggtgtacagcgcgatagag
gacgctgacttccttgccatcgatggagaattttcagggataagcgacggtccaaatgtc
tctgcactaaccaacgggctggacacaccggaggagcgatacacgaagcttaaaaagcat
tccatggactttctgctgttccagtttggactgtgtacattcaagtacgatcaggcaaag
tcaaagtatgtcacgaagcctttcaatttttatatattcccgaaaccgttcaacaggacg
tcccctgacataaagttcatctgccaaagttccagtattgactttctggccagtcaggga
tttgacttcaacaaggtgttctgtcatggaatcccgtacctaaatcaagaagaggaagcc
cagctgagggagcagacagaggagaggaggcatcagcatgctaacggtgtagggacacca
acctacatctccccatcatcctccaaaggccccgcgcatgtacctgaggaacataaagac
ttcatcaacagggtggtagagaaagtcgaggccctcttcactaactcagagaagactttg
gatttggacccgtgtactggctttcagagaaagctgatataccagaccctgaactggaag
tttcccaaggggcttcatgtggaaaccatggaaacagaaaagaaggagcgatacatccag
gtcagcaaagtagatgaagaggagaggaagaggagggagcagcagaaactagagagagag
caggaggagctaaatgatgctgtcggcttctccagggtcatccacgccgtctcgaaatct
ggtaaacttgtggttggccacaacatgctgttggatgtgatgcacaccatccaccagttc
tactgccctcttccagaggatcttcaagactttaaagaggtcacaatgtgtgtcttccca
agacttctggacacaaagttgatggcttccactcagccatttaaggagctgatcactaac
acctctctggcagagctggagaaacagctgaaggagagccccttcaagccaccacaagtt
gaaacggcagaggggttccccagttatgacacggcccaggagcagctccatgaggcaggg
tacgatgcctacatcactggcctctgtttcatctccatggccaactacctgggctctttc
ttgactccacccaaagcttacatctcagctcgatccaaactcattgaacctttcttcaac
aaacttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttg
caacccaaaagagaccatgtcctgtatgtcaccttcccaaaagaatggaagactagtgac
ctctaccagctctttagtgcctttgggaacatccaggtttcatggatagatgacacatca
gcatttgtgtccctaagtcaaacagaccaggtacagatagctatgaacaccagtcgctat
gcagagagttacaggatccaaacatatgcagagtacatccagggcaagcagcaggagaag
gagaagtttgggcagactgccaaaacctggggagaggacggctgggtgaaacctcactac
accacctctgcttctgcaggtggctttggatattccaggggtgtgaggaaacgcagcatc
agtccggttcagggagagcaggggagcggagaacctctaattgcagatggctggagtcac
ttctcatacccggatagcacaggcagcaagaagatgaaaactgatgatacaagtggaaag
gcgaatgctgaagctgttgagagcaagacatcagagggctggttaaagacaacagatgca
tcagactcagcagggttaagtccagtccctgatgaggaaagtcatgagggcacagatcca
ggcagtgatgctgaagggacggttacctggcaacaagctccgacggtccacgggaggaaa
ggtcaaaagaacaaaaagaagtctgaagcggctgaatctacgacatcgctgtttgaagtt
cctgaggtctggtag
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