Xiphias gladius (swordfish): 120800002
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Entry
120800002 CDS
T07311
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120800002 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120800002 (patl1)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120800002 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
120800002 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
120800002
NCBI-ProteinID:
XP_040001627
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Position
LG15
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AA seq
846 aa
AA seq
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MFRFQSLDEDCTLEEEDEGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDER
DGLGGGGGGGRGRGGGRGGGMGVGKESHLRGAEDSSSTHLPTSAGHLPLPSSLPSLNFSS
SSSGLPPPDVEDRGREGGLAESLARLILEADPAIAGVGATERPCPSISSSGSSLAALQGL
DRPRVLPQHSSIPTQPHQHPRHPQHQLPPGPSTSGLHTGPPPSSMLSYQQQQHLLRRGSA
PIGQMNSHNIWENSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKLPPQGRNDEGRDLS
ERVPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHALNHQTHHPTAVHVRAPIQHRYPPPFP
ERLSPNTLLNIANSPLCRGPFPPGVGPVLSQIQRAQLLNSQVAGFARGGPAPALLPGGGG
FRPFFGGPPPPHSHRMGPLPPHGPPNHAPPIRHNTTHLHPQHRRMLTQRMQSRGGDRGRT
GGDRRSRDPYSNLMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQEKERDSS
KKEHTTKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREK
QVWNKRRQILYTVEKMYSLLLEVQDFEKRFVQAPEEDREALLEQHKTNTVQLCNSLREKE
WEDRVSDEQCVMIMSVRKGKRLISRLLPFLPSPQATAIVMAIARNLPALAKKDKQDQVLC
WLVDPVSAVIQSLSSAALTDLLQELQGTDGQLATVLHNKFGVTLLYLILSEGERMQSSDP
NCELMDDNRWTELVFSVTRELLSVPSSSLSSPLFTPPNLLSLFSRYVDRQRLELLQNKLQ
IPALSR
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacgctggaggaagaagacgagggattg
atagaagaggaagatgaaattgatcagttcaacgacgacacctttggagctggggccatc
gatgatgactggcaggaggaacataaacgcctcgctgagctcgatgagcgggatgagcgg
gatgggcttggaggagggggaggaggaggacgaggacgaggaggaggacgaggaggagga
atgggggtgggaaaagaatctcatttaagaggagctgaggactcatcctccacccatctc
cctacctctgcaggccatctccccctcccatcttccctcccttcacttaacttctcctcg
tcttcctccggactgcccccaccagatgtagaggatcgagggagggaaggtggcttggct
gagtcccttgccagactcatccttgaggctgacccagccatcgctggagtcggagcgact
gagaggccctgtccatccataagctcttcaggatccagcctggccgctctgcaggggctg
gatcgtcccagagtcctgccccagcactcctccataccaactcaaccacaccagcatccc
cgtcacccccagcaccagctgcctcctgggccctccacttcaggccttcatactggccct
cctccatcatcaatgctcagctaccaacagcagcagcacttgctgcgcagaggatctgct
cctattggccagatgaactctcacaatatctgggagaacagtatgggttttgggccggta
agtgtcacccctggactggtcacacacatggaggatagtccactaatgtctataatcaaa
gaggtgggccttcctaaattacctcctcagggtaggaatgatgaaggacgggacttgtca
gagagggtcccacctccacggtcttcttcccctgtgattggctcccctccggtaagggca
gtgcctatagggacccctccaaaacagccaatgagccacgctctgaatcatcagacccac
catcccacagcagttcatgtgagagccccgatccagcacagatacccacctcctttccct
gagcgtctgtcacccaacaccctcctcaatatagctaactctccgctgtgccgcggtcca
ttccctcctggagttggtccagttttgtctcagattcaacgggcccaactgctcaattct
caggtggcaggttttgcccgtggtggaccagcacctgcattgttaccaggtggtggaggt
ttcaggccattctttgggggccctcctcctccacacagtcaccgaatgggcccactgccc
cctcatggccccccaaaccacgcgccacccatccggcacaataccacccacctccaccct
cagcatcgccgcatgctcacccagcgaatgcagagtcgaggaggggaccgtggcagaact
ggaggggaccggcgcagtagggacccctacagtaatctgatgactcagaaagagaaggag
tgggttaccaagatccagatgatgcagctgcaaagtactgacccttacctggacgactac
tactatcagaattactatgaaaagatggagaaacgtcaggaaaaagagagagacagcagc
aaaaaggaacacaccaccaaactcattactccacaggtcgccaaggttgaacatacctac
agaccagttcagtttgcaggctctttaggtaagctgacggtctctagtgtcaacaatccc
cgcaagatgattgatgctgtggtgacaactcgcacagatgatgaggagaaaagagagaag
caggtttggaataagagacgacagatcctctacactgtggaaaagatgtacagtttgctg
ctggaggttcaagactttgagaaacgttttgtccaggcaccagaagaggacagggaggct
ctgctggagcagcataaaaccaacacggtgcagctgtgcaactctctgcgggagaaggag
tgggaggacagagtaagtgatgagcagtgtgtgatgatcatgtcagtgaggaagggcaag
cggctcatatccaggctactccctttcctgccctcaccccaggccaccgccattgtcatg
gcgattgcacgcaatcttcctgcccttgccaagaaggacaagcaggaccaggtgctgtgc
tggttagtggacccggtttctgcagtgatccaatcattgtcaagcgccgccctcacagac
ttgcttcaggagcttcaaggcacggatggccagctggccacagtactgcacaacaagttt
ggtgtgacactgctgtatttgatcctgagtgaaggagagaggatgcaaagctctgacccc
aactgtgaactcatggatgacaatcgatggactgagttggtattttcagtaacaagggag
ttgctcagtgttccctcctcatccctctcctctcccctcttcacccctccaaacctgctc
tcgctcttctcgcgctacgtcgatcggcagaggctggagctgctacagaacaagctacag
atccctgctttgtccaggtag
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