KEGG   Xiphias gladius (swordfish): 120800023
Entry
120800023         CDS       T07311                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120800023 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xgl03021]
    120800023 (taf5l)
   03036 Chromosome and associated proteins [BR:xgl03036]
    120800023 (taf5l)
Transcription machinery [BR:xgl03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     120800023 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     120800023 (taf5l)
Chromosome and associated proteins [BR:xgl03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     120800023 (taf5l)
    STAGA complex
     120800023 (taf5l)
    TFTC complex
     120800023 (taf5l)
    SAGA complex
     120800023 (taf5l)
    SLIK complex
     120800023 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 TFIID_NTD2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP WDR90_beta-prop_4th NBCH_WD40 Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_HPS5 RMC1_N Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR19_1st WD40_like PEP5_VPS11_N Nbas_N PROPPIN Beta-prop_NWD2_C WD_LRWD1 Beta-prop_IP5PC_F Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 120800023
NCBI-ProteinID: XP_040001679
LinkDB
Position
LG15:complement(4417321..4422523)
AA seq 600 aa
MKRVRTEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPQQYETQYSRLRSFLSEAEISWAKEVSSILYPLFVYLHLDMVRCGLKGAVDGFYS
RFHGAFLQDSEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYGAASGATAAPNSTTSWAGVDGAEGREGLEVP
AGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFHHTEQMLNTAEVSADSRLLAAGFDS
STVKLWSLRARKLKAKPHQADVSHVHLACDVLEEEVDEEDGSGSEIKTLRGHSGPVFRTA
FLTDSSGLLSCSEDTTIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYSLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHGGTPADGSSGELVGLYAGNTSNVLNVQFMACNLLLVTGTAQEKAEQ
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgcactgagcagatccagtatgccgtggctcagtacctgaagaggaga
cagtatgtggacaccgacggctccctgaaaggagccaaactcttccagtcagctgaggag
atggctgccagcctcacagtgcagacagagtcgggctgtgccaacatcgtctctgctgca
ccctgccagtctgacccgcagcagtacgagactcagtactccaggctgcgctcctttctg
tcagaagcagaaatttcctgggcgaaggaggtgagcagcatcctctacccgctcttcgtc
tacctccacctggacatggtgcgatgtggcctgaagggggcagtagatggtttttacagt
cgcttccacggcgcctttcttcaggacagcgagcagcgtgccaccattgagcagctccgc
cacgttctcaccgctcaggatgtggcagccaatccaaagctgagtgctttcctggagcac
aagtacgtggttcacctgacggagccggcctacagctacctgctgcgttacctgcagagc
gaggacaacagcgccctctgcagggccctcagcacacacctgcaggtggaggtcaccgcc
tccaggcgcacggactaccagctgtatggagccgccagcggggcaactgccgccccaaac
tccaccacctcctgggcgggagtggacggggcggagggcagggaggggctggaggtcccc
gcagggatcccacagagcgaggcggccctggaggctctgcaggactgcatcaagaaagtg
cgtgagggccccccctcgctcaccactgtgtgtttttacgccttccaccacacggagcag
atgctgaacaccgccgaggtctcggctgacagtcggctgctggccgccggcttcgacagc
tccacggtgaagctgtggagcctccgagccagaaagctgaaggccaagccgcatcaggct
gacgtgtcgcacgtccacctggcctgtgacgtcctggaggaggaggtggatgaggaggac
ggctccggcagcgagataaagacgctgcggggtcacagcggcccggtgtttcgtaccgcc
ttcctgacggacagctccggcctgctgtcctgctctgaggacacgaccatacgttactgg
gacctgggcagcttcaccaacacggcgctctaccagggccacgcctacccggtgtgggac
gtggacgtcagcccctgcagcctgtactttgccagcggctcccacgaccgcaccgcccgc
ctctggacgttctcccgcacctactcgctgcggctctacgccggccacctcgccgacgtc
gactgtgtcaagttccaccccaactccaactacctggccaccggctccacagacaagact
gtccggctgtggagcacccagcagggggcgtctgttcgcctcttcaccggccaccgcggc
cccgtgctgtcgctcgctttctcacccaacgggaagtacttggcgtccgccggcgaggac
cagcgggtgaagctgtgggacttggcgtcggggacattgtttaaagacttgcggggacac
acagacagcgttaccagcctgtccttcagcccggacagcagcctggtggcgtcctcgtct
atggacaactccgtccgggtgtgggacatccgcaactcccacggcgggacgccagccgac
ggctcgtccggcgaactggtgggactctacgccggaaacaccagcaacgtgctgaacgtc
cagttcatggcctgcaacctgctgctggtgacgggaactgcacaagagaaagcagaacag
tag

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