Xiphias gladius (swordfish): 120800030
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Entry
120800030 CDS
T07311
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03030
DNA replication
xgl03410
Base excision repair
xgl03420
Nucleotide excision repair
xgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120800030 (rfc1)
03410 Base excision repair
120800030 (rfc1)
03420 Nucleotide excision repair
120800030 (rfc1)
03430 Mismatch repair
120800030 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xgl03032
]
120800030 (rfc1)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120800030 (rfc1)
DNA replication proteins [BR:
xgl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120800030 (rfc1)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120800030 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_33
Rad17
AAA_30
AAA_7
RuvB_N
AAA_17
AAA_14
AAA_16
AAA_18
nSTAND3
BRCT_2
NTPase_1
RNA_helicase
AAA_19
RCF1-5-like_lid
Motif
Other DBs
NCBI-GeneID:
120800030
NCBI-ProteinID:
XP_040001699
LinkDB
All DBs
Position
LG15
Genome browser
AA seq
1189 aa
AA seq
DB search
MMDIRRFFAPAAGKPAVQKPAPNGNLRAEENKKKKNKPLSPDEEVEQKNKKPPKANSSKT
EGKRKDSEKKRKKHAVIESDSDEEEKVKKSKKSPKEKQKTSKAASSPKKDPVQYVSETDS
DSDNFKSLKKVSKAKQNDKSKPKKSDAESARRGAKEKPKTPVKPQASTQGKTGVKSPPVP
VTPKSAPPPKPKQTPTSVFDYFGSGTIQRSDKKLVASTKRKAPTQDSDDLISDEEIARQL
QMEEDMELEKQVHEDEEFAKTLAMLDKEPQAKKARKGSDEKQAPATIPRKSCTDSAAGST
STPSKTNRSMSEDMISPSPKKNLAPVKASSKLATMKKKDEEKDLGPKSKTPISPTKMKIS
PRKEPPTSSSSDMKFTPKTGTTPTALKSSPKKPESTSTSPEDAEKKKVNSSAYRNYLNRD
GPRALGSKEIPKGAENCLEGCVFVLTGVMESMERDDAKALIERYGGKVTGNVSKKTTYLV
QGRDSGASKLEKAESFGTKILDEDGLLELIRTKPGKKSKYELAAEAESKASKTRTPPSQT
SKGTPKSQKISPSKGNSTSPHTPSPSKTGLAQGGRTGGGGTPLGRGSGHAARRELALSSS
SACSPSAPGSSFPSSTQEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQSWHKNH
SAPASKPAARFGKFGGGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCT
RSKNSLKEVIAESLNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLI
RSSKIPIICMCNDRNHPKIRSLANYCFDLRFQRPRVEQIKAAMMSVAFKEGIKIPPPALN
EIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAARARKDMKMGPFDVCRKVFSLGEE
TARMSLIDKSDLFFHDYSLAPLFIQENYPHVRPAAAGGDLKSHLVLLSKTADSISDGDLV
DRRIRSGQNWSLLPTQAIYASVLPGELMRGYMSQFPTFPGWLGKNSSTNKHSRIVQELAS
HMSLKTLGSRQAVNLDYLHYLRQALLSPLQRHGVDGAGQAVQLLDDYQLIKEDVDSIMEI
SIWGGQPDPYSRLDSKVKAAFTRAYNKEVHLTPYSLQSVKKGRRGGESELGGEEMDNELQ
ESEDEGEGLKADAMIKQKKAKASRESKKEKKEDSGKGKGKGKGKGKAKK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgatggacatcaggcggttctttgcaccggctgcggggaagcctgcggtgcagaaacca
gccccaaacggaaacctgagagcagaggagaacaagaagaagaagaacaagcctctgtct
ccagacgaggaggtggaacagaaaaacaaaaagccccccaaggccaatagctccaaaaca
gaggggaaacgcaaggatagtgagaaaaaacgaaagaagcacgcagtcatagagtcagat
tcggatgaggaggagaaagtgaagaagtcaaagaaatccccaaaagagaaacagaagacc
agcaaggcagcgtcatctcccaaaaaagatcctgtgcagtatgtctctgaaacagactca
gacagcgacaacttcaaatccctgaagaaggtctccaaagccaagcagaacgacaagtcc
aaaccaaaaaagtcagatgcagagagtgcgcgtcgaggggccaaagagaagccgaagact
cctgtcaagccccaagcctccacacaggggaaaactggggtgaagtctcctcctgtgccg
gtcacgcctaaatcggccccacctcctaagcccaaacaaacccccacctcagtatttgac
tactttggtagcgggactattcagcgctcagacaagaagctggtagccagcaccaaacga
aaggctccaactcaggactcagatgatctgatcagtgatgaggaaatcgccagacagctg
cagatggaagaggacatggagctggaaaagcaggtccatgaggacgaggagtttgccaaa
acgctggccatgctggacaaggagccacaggcgaaaaaggctcgtaaaggctctgatgaa
aaacaagcccctgccacaattcccagaaagagctgcacagactctgctgctggcagcaca
agcaccccgtcgaagaccaaccgcagcatgtcggaggatatgatcagtccgtcacctaag
aagaaccttgcccctgtcaaagccagctccaaactggccacgatgaagaaaaaggatgaa
gagaaagacctagggccaaagagcaaaacccccatttcacccacaaaaatgaaaatctct
cccagaaaggaaccccccacttcgtcaagctcagatatgaagttcacacccaaaacagga
acaacacccactgcacttaaaagttcccccaagaaaccagagagcacaagcactagtcct
gaagacgctgagaagaagaaagtcaactcttcagcttacaggaactacctcaacagagat
ggaccacgagctctgggctccaaggaaatcccaaagggagcagagaactgtttggagggc
tgtgtgtttgtgttgactggggtcatggagtccatggagagggatgacgccaaagccctc
atcgagcgctatggaggcaaggtgacgggtaacgtcagcaaaaagaccacttacctggtg
cagggcagggacagcggagcctcgaagcttgagaaggcagagagttttggtaccaagatc
ttggatgaggatggtctgttggagctgatcagaaccaaaccaggaaagaagtccaagtat
gagcttgctgcagaggcggagagcaaagcctcaaagaccaggactcctcccagccagact
tcaaagggcacccccaaatcccagaagatctctccctccaagggtaattccacgtctcct
cacaccccaagcccgtcaaagaccggcctggcacaaggtggcaggaccggaggtggtggc
actccccttgggagaggctctggtcacgcggcccggagggagctggccctttcctcctct
tccgcctgctcaccttcagccccaggatcatcattcccatcatcaactcaggaggacgcc
agtctgctgtgggtggacaagtaccgcccgcgctcgctgaagactgtgattggccagcag
ggggatcagagctgtgccaataagctgctacgctggctgcagagctggcacaaaaaccac
agcgcccctgcttccaagccagcagcaaggtttggtaagtttggaggaggaaaagatgat
ggatcaggatataaggctgctctgctctctggacctccaggggtggggaaaaccaccact
gctgccctggtgtgcgaggagttgggcttcagctacgtggagatgaacgccagctgtact
cgcagcaaaaacagcctgaaggaagtcatcgcagagtcacttaacaacacgagcattgag
aacttctacaaaggcacgtctcagacggtgagcagtaaacacgtcctgatcatggacgag
gttgatggcatggctggcaatgaggaccgtggaggaatccaggagatgatcggcctgatc
agaagttcaaagattcccatcatctgcatgtgcaacgatcgcaaccatccgaaaatcagg
tcactggccaactactgcttcgatctgcgcttccagaggccacgagtggaacagatcaag
gcagccatgatgtccgtcgcttttaaggaaggaatcaagatcccacccccagctcttaac
gaaattatcctggcttccaatcaggatgtccgacaggtgatccacaacctgagcatgtgg
tcggctaaagacaaggtgatgacgtacgaccagtgcaagtccgacgcagccagagctcgc
aaggacatgaaaatggggccatttgacgtttgcaggaaggtgttttccttgggagaggag
actgcccgcatgagcctcatcgacaagtccgacctcttcttccacgactattcactagca
ccactcttcatccaagagaactacccgcacgttcgtccagctgctgccggtggagatctg
aagtcccacctggtgttgctcagcaagacggcggactccatctctgatggagacctggtg
gacagacggatccgctctgggcagaactggtcactgctgcctacccaggccatctatgcc
agcgtgttgccaggcgagctcatgagaggctacatgagtcagttccccacattccccggc
tggctcggcaagaactcctccaccaataaacactcccgtatcgtccaggagctggcctca
cacatgagcttaaagacgctgggcagcagacaggcggtgaacctggactacctgcactac
ctgcggcaggcgctgctgagtccacttcagaggcacggagtggacggcgccggtcaagct
gtgcagctgctggacgactaccagctcatcaaggaggatgtggacagcatcatggagatc
agcatctggggcggacagcctgacccctactccagactggactctaaggtgaaggcagct
ttcacgcgggcctacaacaaagaagttcacctgacgccgtactccctgcaaagtgtgaag
aagggccgccgtggtggagagtctgagctgggaggggaggagatggacaacgaacttcag
gagtctgaggacgaaggggagggcctcaaagccgacgctatgatcaaacagaagaaggcc
aaggccagcagggagtcaaagaaggagaagaaagaagattctgggaagggcaaggggaaa
ggcaaggggaaaggcaaggctaagaaatga
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integrated database retrieval system
