Xiphias gladius (swordfish): 120800480
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Entry
120800480 CDS
T07311
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xgl04121
]
120800480
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120800480
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
U-box type E3
120800480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120800480
NCBI-ProteinID:
XP_040002546
LinkDB
All DBs
Position
LG15:9657827..9675138
Genome browser
AA seq
1631 aa
AA seq
DB search
MSCVHYKFSAKLDYNTVTFDGLHITLSELKRQIMARERLKATDCDLQITNAQTREEYTDD
EAHIPKHSSVIVRRTPIGGVKPAGRTFIVDRSDTAVVGSSRPTDSSPSLSLAQLAKTANL
VDANASEEDKIKAMMSQSNHEYDPIHYSKKAVGPPPAHYTCFRCGKAGHYIRQCPMLMVQ
DKSVEGPKPVRISKGIPQSFMVKAEPGTKGAMLTSTGEYAIPAIDAEAYAQGKKERPPFV
PHDQSSSEDDSDPIPDELLCPICNDLMTDAVVIPCCGNSYCDDCIRTALLDSEEHICFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKHARKQVQHASLPPPRPLLARPLHSRQQDP
LLANVTHPPSTSVTTSAPQAQVQPPAPTSATTAAPTPPHVTAVEGQDASPAPAPVVDHHS
PIHSSSQGEPPPPGETDPEPTVTPGSSGTSESGSQPIYAPGHDLSPFLPKAPSPSELHPN
WMNWNLTKRAYSTEIQRKSRREYSRSRSYSRSPFSRSPYTRSRSRSRSRSRSRSRSYSYS
PSRSRSRSRSHGRSYPRSPYSRRNGRSYGRSRTRSRSRSRSYGYRRSGSPRSPPSYRGGG
WEGAEGAGPYRSRSRSRSPGGYRSRSPGGRKPPPRELPPYELKGQSPGGHERWERERYRQ
WEKEYADWYNKYYKDYDNQHPSLHHRGRGSRDRERDRMSPLSRDYSPQGRGRRGREERGA
LPPPSSSSSGTKSSAKVQKTKKLKKKKTGEEPEPSHQSVDRGDATPVRDEPMDEIPSLTK
TPPISSKPPSGAATTKAPASKSTATPVKPSTKATSKTQCDKTKKEKGQKVKAKVKTEGLK
VKSEKVKKKTGEGVVFKKRDSSSSSSSVAKPLKTIKAKPEDAFNSTNPKREKSKSSAVRP
PLLKTPPLSSQNLPLPHPSLHDGPRPGHDIRGRRDLPPSGGLLSIPHQHRLPLLHRPPSP
VDSRRRMGEEGRSLLGPPPGKLRRIDGLGGGGDIISHSHMSHQPPLHRLPPSSERPGLLP
LTGSREMGRGDADRGSIRPLMDLQVKPLTQTRIKLNRDLGRKGSTETAVSDRAPSGPEKT
TSTSDRPAAANISEDDRPSSTTEGSGRKERSTSAERAVSRERPGSAGERLQGSDREQDRS
LGLDRERDRASGSERDRDRGLGSDRERDRVSGSGSHRAAVTVERDTEGERSMRTERRNSS
GGSGGGRSVCLDKMTIAEKSATTRRPADHQEKPSMSSKERGEGSERAAKSDRSVSKDRTE
RSVPSGEKPASAQREAVKDSEGSVVKSKPRISRKALTSQTVSSSRSTQDTKRDSEKDQKS
VSSKPAELPPCSPVNSRGRSPSVSPVPSLSREEPLIQPPPRSKWEREDDEEGQENGVSVP
KEPSPLPQRSRGREGQTDALKPVRSEGRDAIREERRGVVREEKKGRAPREEGKGGRVAQA
NADKSTKTKVAREEGRGVREEGRAAAREDGRGGGGREEGRGMTGKEERLAEGRGGGGREE
NRGPEPRRQRLCSDLGRETDEAAFVPDYSEGEGSEPERGRSGSPSLSLSQPSHSPSLSNN
SESATTTADKKKKKHKKHKKHKKHKKHSGQEKGEHKEHKHKHKKKKHKKNKDKDVEEEEE
KMEKTEEEVPC
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcactataagttttctgccaaactggactacaacacagtaactttcgat
gggctgcatattactctcagcgagcttaaaaggcagattatggcccgggagcgcctcaag
gccacagactgcgacctgcagatcaccaatgcgcagactcgagaagaatacacagatgat
gaagcccacatcccgaaacactcatccgtgattgtccgccgtactccaatcggtggagta
aaacctgctggcaggacgttcattgtagatcgttctgacacagctgtggtgggatcttct
agacccactgattcttctccttctttgtcactcgcccaacttgccaagactgctaacctg
gttgacgcaaatgcatcagaggaggacaagattaaagccatgatgtctcagtccaaccat
gaatatgacccgatacattactccaagaaggcagttggaccgccacctgctcactatacc
tgctttcgttgtggaaaggctggtcactacattcgacaatgccccatgctgatggtccag
gataagagtgtggagggacccaagccagtaaggattagtaagggtattcctcagagcttc
atggtgaaagcagagccgggcaccaaaggagccatgttgaccagcaccggagaatatgca
atacctgcaatagatgcggaagcgtatgcacaaggaaagaaggagcgacctccctttgtt
ccacacgaccagtcatcatctgaggacgattcagacccaatccctgacgagctcttgtgt
ccaatctgcaatgacctgatgacagacgccgtagttataccctgctgtggaaacagttac
tgcgatgactgtatccggactgccttgttggactcagaggaacacatctgcttcacatgc
aaacagtcagatgtctcacctgataatctcatcgccaacaaatttcttcgacaggctgtg
aacaactttaagaatgaaacaggatacaccaaacatgcacgcaagcaggtccaacatgca
tccctgccgccaccacgccctctgttggccaggcctctgcactcaagacagcaggaccca
ctgctggctaatgtcacgcaccctccttctacaagtgtaaccaccagcgcccctcaagca
caggtccagccccctgcacctacttctgctactactgctgctcctactcctcctcatgtc
actgctgtcgaaggtcaagatgcttcaccagcccctgcacctgttgttgaccaccattct
cccatacactccagcagccagggtgaaccacccccaccaggtgagacagatccagaacct
actgtgacaccaggctcatcaggtacctcagaaagtggatcacagcctatttatgcccct
ggacacgatttatcccccttcctcccaaaagccccaagcccatcagagttacatccaaac
tggatgaattggaacttaacaaaaagagcttatagtacagaaatccaaagaaagagccga
agagagtattccaggtcccggtcatacagtcgctctccattcagccgttctccttacact
cgctctagatccagatccagatccagatcgagatcaagatccaggtcttactcttattct
cccagtcgatcccgctcccgttcacgctcccatggccggtcatatccccgctccccttat
tccagacgcaatggacgcagctatgggcgctcacggacaaggtcccgctcccgctcaagg
tcttatggctatcggcgctctggctcaccaaggtctcctccctcgtatcggggtggaggc
tgggagggagcagaaggagcaggaccctacaggtctaggtcacggtctcgctcccctggt
ggctaccggagccgtagccctgggggacggaagccacctcctcgggagctaccaccgtat
gaactgaagggacaaagtcctggaggccatgagcgctgggagagagaaaggtatcgacag
tgggaaaaggagtacgcagactggtacaacaagtactacaaagactacgacaaccaacat
ccctcactgcatcacagaggtcgtggcagcagagacagggagagggacagaatgtcccca
ttatccagagattactccccccaggggagaggaagaagagggagagaagagagaggtgct
ctacctcctccatcctcttcctcatcagggaccaagtccagtgctaaagtccaaaagaca
aagaaattaaaaaagaaaaagactggggaggaaccagaaccatcacatcagtcagtggac
agaggtgatgctactcctgtcagagacgaaccaatggatgaaataccttcactcactaaa
acgccacccatctcctcaaagcctccatctggtgctgcaaccactaaagctccagcttct
aaaagcactgccacacctgttaaaccctcaacaaaggccacatcaaagactcagtgtgat
aagactaagaaagagaagggtcagaaggtaaaagctaaagtgaagacagagggtttgaag
gtaaagagcgaaaaagtgaagaaaaagactggagaaggagtggtgttcaaaaagagagac
tcttcatcctcttcctcctctgttgctaaaccgttaaagaccattaaagccaagccagaa
gatgctttcaactcaactaaccctaaaagagaaaagagcaaaagctctgcagtgaggcct
cccttgcttaagacccctcctctgtcctcccagaacctgcctctacctcatccctctctt
catgatggccctcgacctggccacgacattcgagggagaagagatcttccaccgagtgga
ggtctcctttccataccacatcaacacagactcccactcctccaccgacccccctcccca
gtggacagtcgaaggaggatgggagaggagggccggtctttactcggacctcctcctgga
aagctgaggaggatagatgggttagggggtggtggtgatatcatctcccactcacacatg
tctcaccagcccccgcttcacagactcccaccctcttcagagagacctggtcttcttccc
ctaacagggagccgtgagatgggccggggagacgcagatcgggggtccatcagacctcta
atggacctgcaggtgaagccactgacccagacgaggatcaagttaaacagagatctaggg
agaaaaggcagcactgagacagcagtctcagacagagcaccatcaggtcctgagaagaca
acgtccacttcggaccgaccagctgctgctaacatctctgaagatgaccgacctagcagt
acaacagaaggatctggaagaaaggagcggtctacatctgctgagagggcagtctccaga
gagagaccagggagtgctggagagagactgcagggctcagacagagagcaggacagaagt
ttgggactggatagagagcgagacagagcttctggatcagaaagagacagagacagaggt
ctgggttctgacagagagagggacagagtctccgggtcaggctcacacagagcagcagtt
acagtggagagagacaccgaaggagagcggtcaatgaggacagaacgaaggaactccagt
ggtggaagtggaggagggaggtcggtctgtctggataaaatgaccatcgctgagaaatca
gccaccaccaggagaccggcagaccatcaggagaaaccaagcatgtcctctaaggagagg
ggcgaagggtcagaaagagctgctaaatctgataggagtgtgtccaaggacagaacagag
aggagtgtcccctcaggagagaaaccagcttctgctcagagagaagcagtgaaagattct
gaggggtctgttgtgaagagcaaacccaggatcagccgaaaggctctgacaagccaaact
gtgagctccagtagatcaactcaggacacaaaacgggactcagaaaaagaccagaaaagt
gtatcctctaaacctgcagagctgcccccctgtagccctgtgaacagccgtggtcgcagc
ccgagtgtcagcccagtgcccagcctgtccagggaggaaccactcattcagccgcctcct
cgctccaagtgggagagagaggatgacgaagaggggcaggaaaatggagttagtgtgccc
aaggagccctcaccactgcctcaaaggagccgaggcagagaggggcagactgatgcactt
aaacctgtcaggagtgaaggccgggatgccataagggaggagaggagaggagtagtgagg
gaggagaagaaagggagagcaccaagagaagaaggtaagggtggcagggtggcacaggca
aatgctgacaaatcaaccaaaacaaaggttgcgagggaggaggggagaggtgtaagagaa
gaaggaagagctgctgcaagagaggatgggaggggaggcggcggaagagaggaggggcga
ggaatgacagggaaggaggagagattagcagaaggcagaggtggaggaggacgtgaggag
aatcgcggcccagagcccaggagacagcgtttgtgttctgacttgggtcgtgagacagac
gaggccgctttcgtgcctgactacagtgaaggcgaaggctcggagccagagagaggaagg
agtggcagccccagtctgtccctcagccaaccctcccacagccccagcctgagcaacaac
agcgaatcggcaaccaccacagcggacaagaagaagaagaaacacaagaaacacaagaaa
cacaaaaagcacaagaagcacagtggtcaggaaaaaggagaacacaaggagcataagcac
aaacacaagaaaaagaaacacaaaaagaacaaagacaaagatgtggaggaagaggaggag
aagatggagaagacagaagaggaggttccatgctaa
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integrated database retrieval system
