Xiphias gladius (swordfish): 120800769
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Entry
120800769 CDS
T07311
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03013
Nucleocytoplasmic transport
xgl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120800769 (upf2)
03015 mRNA surveillance pathway
120800769 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120800769 (upf2)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120800769 (upf2)
mRNA cycle factors
P-body specific factors
120800769 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
120800769
NCBI-ProteinID:
XP_040003041
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Position
LG2:complement(2701902..2724475)
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AA seq
1289 aa
AA seq
DB search
MTDVCFATVSSMPAERKRSVNMDEKEVCPFSNKEKEKDRDGERRPASARDKAKDEAKVSG
KKDSGKEEKRKRLEEEKKKKEEKDRRKKEEEKQKAEEEQKKKEEEEKRQQEERERKLQEE
EAKRQREEEAALLKEQEEGHQLHQEAWERHQCRKELRSKNQNAQEGRPEEAFFSRLDSSL
KKNTAFVKKLRTLTEQQRDSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSL
FHQRYAEFAPLLLQAWKKHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIY
EQLKTIIGTDRETHTHVSVVISFCKHCGDDIAGLVPRKVKLAAEKFGLSFPLSEIISTEK
QQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQK
LLANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFY
ENLVDLKAFVPAILFKDNEKSSQGKDKDDAKDGREGKDTASTTEELELELEALDITDEPL
ELEGADEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMD
FCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRF
HIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETC
GRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPP
LQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANL
LAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLFSFISFGVNQDGSPSPLDPPEHLFRLRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQ
RYIWWKKSIDVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSMEEATKQVTDLEREVLVK
LGLAMEKDGRSSAMSEGEVLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDDGSENEE
EEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENL
QQRSGETVKVHQLDVAIPLQLKSQLKKGGSGQPCIGEGDSDISDTMQFVMLTRKGNKQQY
KILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPAN
TNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacagttagcagtatgcctgctgaacgcaagcgctcagta
aacatggatgagaaagaagtttgccccttcagtaacaaggaaaaagagaaggacagagat
ggtgagagaaggccagcatctgctcgagacaaagcaaaagacgaggccaaagtgagtggt
aaaaaagacagcggcaaagaggagaagagaaagcgcctagaggaggaaaagaagaagaaa
gaggaaaaggaccgaagaaagaaagaggaagaaaaacagaaagcggaggaggaacagaag
aagaaagaggaggaggagaagagacagcaggaggagcgggagaggaaactccaagaggag
gaggccaaaagacaacgcgaggaagaggcagctctcctaaaggaacaagaggaggggcac
cagctgcaccaggaggcctgggagcgccatcagtgcaggaaggaactccgcagcaagaac
cagaatgcccaagagggtcggcctgaagaggccttcttcagccgactggactccagcctt
aaaaagaatactgcctttgtcaagaagcttcgtacacttactgaacagcagcgagattcg
ctctccaatgactttgcctcactgaatctcagcaagtacattggcgaggccgtgagctct
gtcgtggaggccaagctgaagatctctgacgtaggctgcgctgtccatctgtgttccctc
ttccaccaacggtatgctgagtttgctccgttactgttacaggcgtggaagaagcacttt
gaagcgaggaaggaggagaaggcgcccaatgtgagcaagctgcgcacagatctgcgattt
atcgcagagctcaccatcgttggcctcttcacggacaaagagggcctttcgctcatttat
gagcagctcaagaccattattgggaccgaccgggagacacacactcacgtgtcggtggta
atcagcttctgtaagcactgtggggacgacattgccggtctggtgccccgcaaggtgaaa
ctggctgctgagaagttcggcttgtccttcccgctgagtgagataatcagcacagagaaa
cagcagcccttccagaaccttctgcgggagtacttcacatcactcaccaaacacctgaag
aaggaccaccgggagctgcagaacattgagaggcagaacaggcgtatcctgcattccaaa
ggggagctgagtgaggacaggcacaagcagtatgaagagtttgccacttcctaccagaaa
ctgctggccaacactcagtccctggctgatctgctcgatgaaaacatgccagatttgcct
caggataagactgtgcaggaggagcatggtcctggcattgatattttcacccctggtaag
cctggagagtatgacctggaaggagggatctgggaagatgaagacgctcgtaacttctat
gagaacttggtggacctgaaggctttcgtccctgctatcctcttcaaggacaacgagaag
agtagccagggcaaagacaaggatgacgccaaagatgggagagaagggaaggacacggcc
agcactacagaggagctggagctggagctggaggctctcgacatcacggatgaacctctt
gagctggagggagcagacgaggcggaaaatgaagaactggccaagaaactgctggatgag
caagaacaagaggatgaggaggccaacacggggtcccacttgaagctaatcgtggacgcc
ttcatccagcagctccccaactgtgtcaacagagacctcatagacaaggctgccatggac
ttctgcatgaacatgaacaccaaatccaacaggaggaagcttgtccgagccctcttcact
gtcccacggcagaggttggatctgctccccttctactctcggttggtagcaactcttcat
ccttgcatgtcagatgtggctgaggacctctgctccatgctgaagggagacttcaggttt
cacattcggaagaaggaccagatcaacatcgaaaccaaaaataaaactgtcagatttatc
ggggaactggccaagttcaagatgttctcaaaaacagacacgcttcattgtctcaagatg
ctgctgtctgatttcactcatcaccatattgagatggcctgcacactgctagagacctgc
ggccgcttcctcttccgatcccccgactcccacttgcgtaccagcgtcctgctggaacaa
atgatgcgtaaaaagcaggcacagcatctggatgcccgctacgtgacgatggtggagaat
gcctactactactgcaaccccccacccatggagaagacggtgaagaagaagaggccgccg
ctgcaggagtacatccgcaagctgctctacaaggacctgtccaaggtcaccacggagaag
gtgctgaggcagatgcggaagctgccgtggcaggaccccgaggtcaagagctacctgatc
tgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgtgtagccaacctg
ctggccggcctggtggcctaccaggaggacgtgggcatacatgtggtggacggagtgctg
gaggacattcggctgggcatggaggtcaaccagcccaagttcaaccagcggcggatcagc
agcgccaagtttctgggcgagctctacaactaccgcatggtagagtcggccgtcattttc
cgcaccctcttctccttcatctccttcggagtcaatcaggacggcagccccagcccattg
gaccctccagagcacctcttccgcctccgtctggtctgcaccctgctcgatacatgcggc
cagtactttgaccgaggctccagcaagaggaagctggactgtttccttatctacttccag
cggtacatctggtggaaaaagagcattgatgtttggaccaaggaccacccgttccccatc
gacatcgactacatgatcagcgacaccctggagctgctcaggcccaagatgaggcttagc
tgctccatggaggaggccactaaacaggtcactgacctggagagggaggtgctcgtcaag
ctaggtctggccatggagaaggacggccgctctagtgccatgagcgaaggggaggtgctc
gacgaggaagatgacgatggcgatgacgacgaagagggaggtgctgagactgaggagcag
tcgggcaatgagagcgaaatgaacgaacaagaagaggatgatgggtcagagaacgaagaa
gaggagagggaggaagaggaggaagagaacaccgactacctgactgactccaataaagaa
aatgagactgatgaggagaacaatgaggtgaccatccgtggcggcggactgaagcacgtg
gcctgtgccgaggatgaggacttcattcaggctctggataagatgatgctggagaacctg
cagcagcgtagcggcgagacagtgaaggttcaccagctggacgtggccatccctctgcag
ctgaagagtcagctgaagaagggaggctccggacagccgtgcatcggggagggcgactcg
gacatctccgacaccatgcagttcgtcatgctaacacgcaagggcaacaagcagcagtac
aagatcctgaacgtgcccctgtcatcacacctggcggcgaaccacttcaaccagcagcag
gccgaacaggaagagcgcatgaggatgaagaaactcaccctggacatcaatgagagacag
gagcaggaggactaccaggagatgatgcagtccctcgcccagcgtccggctccggccaac
accaaccgggagcgtcggccccgttaccagcacccgaaaggggctcccaacgccgacctc
atcttcaagactggaggaaggagacgctga
DBGET
integrated database retrieval system
