Xiphias gladius (swordfish): 120800846
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Entry
120800846 CDS
T07311
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120800846 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120800846 (smarca5)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120800846 (smarca5)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
120800846 (smarca5)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
120800846 (smarca5)
RSF complex
120800846 (smarca5)
WICH complex
120800846 (smarca5)
B-WICH complex
120800846 (smarca5)
NORC complex
120800846 (smarca5)
BRF complex
120800846 (smarca5)
NuRF complex (fruit fly)
120800846 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
120800846
NCBI-ProteinID:
XP_040003187
LinkDB
All DBs
Position
LG15:complement(12434699..12443350)
Genome browser
AA seq
1034 aa
AA seq
DB search
MSESVNCVEQREEQTELEEGGGAEKSDSSDAGKESSSDAGPDGQDASSSSSSKTKDSAPG
YEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAG
DNRHRRTEQEEDEELLNESTKTTNVCARFDESPSYVKTGKMRDYQIRGLNWLISLYENGI
NGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVC
LIGDRDERTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSK
LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTNNCLGDQK
LVERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAG
KMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMAVLDKLLPKMKEQG
SRVLIFSQMTRMLDILEDYCMWRNYGYCRLDGQTPHEERQISINAYNEPNSSKFIFMLST
RAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIVE
RAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAILE
RGERKTMEMKEKLSSLGESSLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRERK
ANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYK
VPRNPDMPNSAQMQKEEQAKIDEAEALTEEELEEKENLLQQGFTIWNKRDFNQFIKANEK
WGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKK
ALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRN
SPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKTGSAQKRKSE
GTPDGRGRRKKLKL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagcgtaaactgcgtagaacagcgggaagaacagactgaacttgaagaaggc
ggaggagcggagaagtctgactcttcagatgctggaaaagagtcctcctcagatgctggt
cccgatggacaagatgcatcctcctcctcgtcatccaaaactaaagattccgccccaggt
tatgaggagaaagtgcaaacagaccggaccaacagatttgagtacctgttgaagcaaaca
gagctgtttgctcatttcatccaaccagccgcacagaagacccccacctcccccctgaag
atgaaaccaggacgtcctcgcatcaagaaagacgagaaacaaaacctgctgtccgccgga
gacaaccgccatcgccgcaccgagcaagaggaggatgaagagcttctaaacgagagcacc
aagactactaatgtctgcgctcgctttgatgaatctccctcctatgtcaaaacaggaaaa
atgagggactatcagatccgtggtctgaactggctcatctctttgtatgaaaatggcatc
aacggcatcctcgccgatgagatgggtctgggtaagactctccagactattgccctgctg
ggttatatgaagcactacagaaacatccctggtccccacatggtgctggtgcccaagtcc
accctgtacaactggatgaatgagttcaagcgatgggtgccctctcttcgtgcagtctgc
ctgatcggagacagagacgagaggaccgccctgatcagagacgtgctgctgccaggagag
tgggacgtgtgcgtcacatcctacgagatgctcatcattgaaaaggctgtgttcaagaaa
ttcaactggagatacctggttattgatgaggcccacaggatcaagaatgagaaatccaag
ctgtcagaaattgtgcgagaattcaagaccaccaatcgcttactgctgactggaacaccc
ctgcaaaacaacctccatgagctgtgggctctgctgaacttcctgctgcctgacgtcttt
aactcggcagaggactttgactcctggtttgacacaaacaactgcttgggtgatcagaag
ttggtcgaacgtcttcacactgttttgcgtcccttcttgcttcgtcgtataaaagctgat
gtggagaagactctgctcccaaaaaaagagatcaagatgtatgtgggactgagcaagatg
cagcgagagtggtacacaaagattctgatgaaggacattgacattctgaactcagcggga
aagatggacaagatgcgcctgctgaacgttctcatgcagctgaggaaatgctgcaaccat
ccgtacctgttcgacggagccgagcccggccctccctacacaactgacctccacctggtg
gtgaacagtggcaagatggcagtgctggacaagctgctacccaagatgaaggagcagggc
tcccgcgtgctcatcttcagtcagatgaccaggatgctggacatcttggaggactactgc
atgtggaggaactacggatactgccgcctggatggtcagacgccgcatgaggaaagacag
atctctatcaatgcatacaatgagcccaacagctctaagttcatcttcatgttgagcacc
agagccggtgggctgggtatcaacctggctacagctgatgttgtcatcctctatgactca
gactggaaccctcaagtcgacctgcaggccatggaccgggctcacaggattggtcagcag
aagcaggtacgcgtgtttcgtttcatcaccgaaaacacagtggaggagaggatcgtagag
agggccgagatgaaactgcgtctggactccattgtcatccagcaaggaagacttgtggat
ccaagcgccaacaagctaggcaaggatgagatgctgtccatcatccgccacggtgccaca
cacgtgtttgcttccaaagagagtgagatcactgatgatgacattgatgcgatcctggag
agaggcgaaaggaagacgatggagatgaaggagaagctgtcttctctgggtgagagctct
ctgagaaacttcaccatggacactgagaacagcagtgtgtacacatttgaaggagaggac
tacagagagaagaaaaaggtcattaccaactggatcgagccacccaagagggaaaggaaa
gccaattacgctgtggacgcctacttcagagaagccctgcgagtcagtgagcccaaagca
cccaaggctcctcgtcctcctaagcagccaaatgtccaggacttccagttcttccctcca
cgtctctttgagcttctagaaaaggaaattctgttctataggaagaccataggctacaag
gttccccgtaatccggacatgccaaactcagctcagatgcagaaagaggagcaggctaag
attgatgaggccgaggctctgacagaggaggaactggaagagaaggagaacctgctgcaa
cagggatttactatttggaacaaacgtgacttcaaccagttcatcaaagccaacgagaag
tggggaagagatgatatagagaacattgccagagaagtggagggaaaaactcctgaagaa
gtcatggaatattctgctgtgttctgggagcgctgcaatgagctgcaggatatcgagaag
atcatggcccagatagagagaggagaggccaggattcagagaaggattagcatcaagaaa
gcacttgactcaaagattggtcgctacaaggctcccttccatcagctccgtatctcctac
ggcaccaacaaaggcaagaactacacagaggaagaggaccgcttccttatctgtatgctc
cacaagctgggctttgacaaggagagcgtgtatgacgagctgcgtcagtgcatccgtaac
tcgcctcagttccgcttcgactggttcctcaaatccaggactgccatggagctccagagg
cgatgtaacaccctgattacgctgatagagagagagaacatggagctggaggagagggag
aaggcggagaaaaagaaacgaggcccaaagactggctcagctcagaaacgaaagtcagag
ggaaccccagatggtcgtggacgcaggaaaaagctgaagttgtga
DBGET
integrated database retrieval system
