Xiphias gladius (swordfish): 120800931
Help
Entry
120800931 CDS
T07311
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xgl03009
]
120800931 (pdcd11)
Ribosome biogenesis [BR:
xgl03009
]
Eukaryotic type
90S particles
Other 90S particles
120800931 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
Suf
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
OB_RRP5
UTP6_C
ARM_TT21
ARM_TT21_5th
RPN7
TPR_CcmH_CycH
TPR_16
PPR
Peptidase_M36
Motif
Other DBs
NCBI-GeneID:
120800931
NCBI-ProteinID:
XP_040003344
LinkDB
All DBs
Position
LG15:25058115..25073496
Genome browser
AA seq
1815 aa
AA seq
DB search
MASLEEDFPRGGTAKKPTESKIVVQRSEVDNLFQSNELAETKKRKGVVKGDGKKLKKQKT
GKEKEDGLTLNAAAKCVEILHIKNVKEGMLMLGCVKEVADFEVTVGLPCGLQGFLSIRNI
SDSYAKLLSEQLDSADTEEICSLPHLFYPGMVLRCVVAKLDIARGGSLSIQLSINPKLVN
KALTSSSLKAGMVLSGCVESVEDHGCIVDIGINGSKAFVSMKALKDKHNDQQELKVGQYV
TSLVEEVKNEGRVVRLSVNPLTIAQACADSMQGWNLTNILPGLLVNATIKMVTKHGLILQ
FLTSFSGQVDFLHMEPEKASNYKEGTEVRACVLYVEPSTRLVALSLRSYLVQPGKRLDST
PAGGDRIGEVVKNCKMTTIHHMSGAMLELPGKTLAFVHRNHLKEPNEPANENRVRAIPEH
TCRILDFSPVDQIHFASLRKSVIERRFYRYHDLQAGQVVEGTVSVLLNHGMVVHLSDHIK
GLVPRTHLSDIILKNPEKKYTEGMKVKCRVLSVDAENKKLYLTRKKALIESSLPLFLSYT
DARPGCVSHGYIVCIKDFGCIVRFYNSVKGLVPLRELSSEPIISPEEVFYVGQVLKAKVL
QCNPEKAKMVLSFKAAVEGQTEKVPNLQFDCEVGKRLEAKVTKKLPNGLEVAILPDEIRA
VLPTMHLSDHMSNCPLLWESLQEGDNISNLICFSNNKQNITLTKKPTLKWSLEEGLVAKD
FSEIAVGMQLIGLVKNIMSYGVFVEFPYGLVGLAPKSAMTDKFISDTTAAFQLGQTVIAK
VTNLDEEKQRFLITLKISEVISPEGNAQTRLINGLQERQAVTEMLAMRDNSDLRQQLAAL
SVGQKLKLTLDTEKDSGATFKSDDLGGATILASKHHVMGVSLTTGQKVTAVILHVDILST
CVYVSLLPKLVGKKKSLSEGSKYTAMVQYIDKDFAVISLDETAQLTVIQTSNHLNEIFLS
ESDKLKVGTSLAVEVTEPSCQELHGLPLVSWQRSAPKRQRTSSENQLGSKGHCFGEILQG
KVRTVKPTCIQVTLEDGSTGSVHVSEVLEATKVCQGSFPTSTVKVGSVVTARVIGGREAS
SHRFLPFSHPKFTYTIPELTLIPSKLDKSVDFKPVKAKEKFNSYKVGDEITCFVSKFNPE
RKSLEVTTDPCVTGTVELLAMITDPKDASHPEKLYKLGQAFRAKVVEMSTKPRRFALSLT
GVHKLEKGSVTLGIVTNIHPQVGLLVKLPFGGMGTVAVTDLADAYRPNPLVGYSKGQLLR
CFCLESENGKWQLSLRPSRLNPQQAKPVKDPEVLSLDELKAGQIIRGFIKSVGEQGVFIR
LSRHITGRAQLQQSTKYFFKDQKVFSEHLPPNTLLTTKILSIDREAELVNLSLLPVDTGK
PDVLPETLGLPLRLVGEEKKKHDTERKKKRALSESEQKQAESQVPKKKKKKAKKDDNDSG
VEVYFREEEDKEDEEEPKPYTAKQVMPSSAAPSRLQVASGFSWDVGLNSLKPVSVAQYGD
SSDGEDQDESSKPQKKSRHELEQEKKAAEKALVQRETELMDPSLRPEDAAAFERLLLASP
NSSLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEET
LKKVFERALQFCEPMPVYQQLADIYAKSNKTKEAEGLYNTMVRRFRQNKAVWLSFGTFLL
QQGQSDAASVLLQRALKSLASKESVDVIAKFAQLEFRYGDVERGRTMFDKVLTSYPKRTD
LWSVFIDLMVKHGSQKEVRALFDRVIHLSVSAKKIKFFFKRYLEYEKKHGTPQSIQAVKE
KAVEFVEAKGTEDAN
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggcatcattggaagaggacttccctcgaggagggaccgcaaaaaagcccactgagagt
aaaatagtggtgcagcgcagcgaagtggacaacctgttccagtcaaacgaactagcagaa
actaagaaaagaaagggggtggtcaaaggtgacggcaagaagctcaagaagcaaaagacg
ggcaaagaaaaggaagatggtctgacactcaatgcggcagccaagtgtgtggaaatccta
catatcaagaatgtgaaggagggtatgctgatgctgggctgtgtgaaggaagttgcagac
tttgaggtgacagttggtctgccttgtggtctgcaaggcttcctcagcatcaggaacatc
agcgactcgtacgccaagctgctcagtgaacaacttgattcagctgacacagaggagatc
tgctcactgcctcacctcttctaccccggcatggtgttaaggtgtgtggttgccaagttg
gacatagctagaggaggctctctcagcatccagctgtcaatcaatccaaagctggtcaac
aaggctcttacctcaagctctctgaaagctggcatggtcttgagtggatgtgtggagagt
gtagaggatcacggctgcatagttgacattggcatcaatgggtccaaagcctttgtgtca
atgaaagcattaaaagacaaacacaacgatcaacaagagctgaaagtgggtcagtatgtg
acttctctggtggaagaagtaaagaatgaagggcgcgtggtccgactttccgtcaacccc
ctgaccatcgcccaggcctgtgctgattccatgcagggctggaacctcactaacattctg
cctggccttctggtcaatgcgacgatcaaaatggtgaccaaacatggtctgatccttcag
ttcctgacctcttttagtggccaggtggattttctccacatggagccagaaaaggcatcc
aactacaaagagggaactgaggtgcgagcttgtgtgctctacgtggagccatccacacgt
ctggtggctttgagtctgcgcagctacctcgttcagcccgggaaaagattagactcaact
cctgctggtggtgaccgcattggtgaggtggtgaagaactgcaagatgaccactatacac
cacatgtccggagccatgttggaattgcctggcaaaaccttggcatttgtacataggaac
cacttgaaagagccaaatgagccagctaatgagaacagagtgcgggcaatacctgagcac
acctgcaggatcctggacttcagccccgtggaccaaatccattttgctagtctacgcaag
agtgtgattgaaaggcgtttttatagatatcatgatcttcaggctggtcaagttgtagag
gggacagtgtcagtcctgctgaatcatgggatggtggtgcatttgtctgaccacattaaa
ggtctagtgcctcggacacacctgtctgatattatcctcaagaacccagagaagaagtac
acggagggcatgaaggtcaaatgtcgggtgctgtcagtagatgcagagaataagaagctg
tacctgaccagaaagaaggccctgatcgaaagctccctgccattgtttctcagctatact
gatgctcgtcctggctgcgtgtcccacggctacatcgtctgcatcaaagactttggctgc
atcgttcgtttctacaatagcgtcaagggtctggtgcctctccgtgaactcagctctgag
cccatcatcagtcctgaggaggtcttctatgttgggcaggtgttaaaggctaaagttctt
cagtgtaaccctgagaaggcaaagatggtgctgtcatttaaggccgcagtggagggacaa
actgagaaagttcccaacctccagtttgactgtgaggtggggaagaggctggaggccaag
gtgacgaaaaagttacctaatggtctggaggtggccatcctccctgatgagatacgagct
gtgctacccaccatgcacctctctgatcacatgtcaaactgccctctgctgtgggagagc
ctgcaggagggagacaacatctcaaacctcatttgtttcagcaataacaagcagaatatt
actctcaccaagaaaccgaccttgaagtggtcattggaggagggactggttgccaaggat
ttctcagagattgcagttggaatgcagctgattggcttggtcaagaacatcatgtcttat
ggcgtctttgtagagttcccatacggcctcgttggtcttgcacccaagtcggccatgact
gacaagttcatcagtgatacgacagccgccttccaactgggccagacagtcattgctaag
gtgaccaacctggatgaggaaaagcagcgtttcctgatcacacttaagatttcagaggtc
atatctccagagggcaatgcccagaccagactcattaatggtctgcaggagagacaagct
gtgactgaaatgttggctatgagagataacagtgatcttcgccagcagctggccgcactg
tctgttggtcagaagctgaagctgaccctggatacggagaaagacagtggtgcgacgttt
aagtctgatgatttgggtggtgctaccatactggccagcaagcaccatgtcatgggtgtt
agcttgaccacaggacagaaagttactgcagtcattcttcacgttgacatcctgtctact
tgtgtctatgtgtccctccttcccaagctggtgggaaagaagaaatctttaagtgaagga
tcaaaatacacagcgatggtgcagtacatagacaaagactttgctgtcatctcattggat
gagacggcacagctgactgtgatccaaactagcaaccacctgaatgagatattcctgtct
gagtcggacaagctgaaggtggggacgagtttggccgttgaggttacagaacccagctgt
caggaactacatgggctccctctagtgtcatggcaacgcagtgcgccaaaacgacagcgc
acatcctcagaaaaccagctgggctccaaggggcactgcttcggtgaaatcctgcagggg
aaagtgcggacagtgaagcctacctgcattcaggtcacactagaggatggaagcacaggc
agcgtgcacgtgtctgaggtgttggaggccacaaaggtgtgtcagggatccttcccgacg
tccacggtgaaagtgggcagtgtggtcaccgccagggtcattggaggacgagaagcctcc
agtcacagattcttgccgttttctcatcccaaatttacctataccattcctgagctcaca
cttatacccagcaaactggataagagtgtagatttcaaaccagttaaagctaaagaaaaa
tttaatagctacaaggtcggggacgaaattacatgctttgtgtcaaagtttaatccagag
aggaagtctttggaggtcaccactgatccctgtgttactgggacggttgaacttctggcc
atgatcactgatcctaaagatgccagccacccagagaaactgtacaagctgggccaagcc
ttccgtgctaaagtggtcgaaatgagcaccaaacctcgtcgctttgcgctatcactcaca
ggtgtccataaactggagaaaggcagcgtgaccttagggatcgtgactaatattcacccg
caagttggcctcctagtcaagcttccctttggtggcatggggactgttgccgtcactgac
ctggctgatgcctacaggccaaacccgctggttgggtacagcaagggtcagctactcagg
tgtttctgcctggagagtgaaaatggcaagtggcagttgtctctacgtccatcaaggctg
aacccacagcaggccaagccagtgaaggatccagaagttttgtctctagacgaactaaag
gcaggccagatcatcagaggcttcatcaagtctgtgggagagcaaggcgtcttcatcagg
ttgtctcggcatataactggaagagcccaacttcagcagtcgaccaagtacttttttaaa
gaccaaaaggtcttctctgagcacctgcctcccaacactctgctcaccaccaagatcctc
agtattgacagagaggcagagttggtcaacctctctctgctccccgttgacaccgggaag
ccggatgtccttccggaaactcttggtctgccactgcgtctggtcggagaggagaagaag
aaacatgataccgagaggaagaagaaacgcgcactgtctgagagcgaacagaaacaagca
gagtcccaggtcccaaagaagaaaaaaaagaaagctaagaaggatgataatgacagcgga
gtcgaggtgtacttcagggaagaggaggataaagaagatgaagaagaacccaaaccttat
actgcaaaacaggtgatgcccagctcagcggctccatccagactgcaggtggcatcaggt
ttctcctgggatgtgggactgaactccctgaagcctgtctctgtagctcagtacggggac
tccagtgatggagaggaccaagacgaaagcagcaagccccagaagaaatctcgccatgag
ctggagcaggagaaaaaggcagcagagaaggcgctggtacagcgggagactgagctcatg
gatcccagccttcgccccgaagatgctgctgcctttgagcgcctgctcctagcctcaccc
aacagctctctgctgtggctccagtacatggctcaccatctgcaggccacacagatcgag
caggcccgtgctgtggccgagagggctctcaaaactatttccttcagggaggagcaggag
aagctgaatgtgtgggtggctcttctgaacctggagaacatgtacggcacagaggagacc
ctaaagaaagtgtttgagcgggcgctgcagttctgtgagcctatgcctgtctaccagcag
ctggctgacatctacgccaagtccaacaagaccaaggaggcagagggtttgtataatacg
atggtgaggcgtttccgtcagaataaggcagtctggctgagcttcgggaccttcctgctc
cagcagggtcagagcgacgctgctagtgttctcctgcagagggcactaaagagtctggcc
tcaaaagaaagtgtggacgtgatcgccaagttcgctcagctggagttccgttatggtgat
gtagagagaggtcgcaccatgtttgacaaagtcctgacaagctatccgaaacgtaccgat
ctctggtctgtcttcatcgacctcatggtcaaacatggatcacagaaggaagtcagggcg
ctctttgatcgtgtgatccacctgagtgtttcagcgaaaaagatcaagttctttttcaag
cgctacctggagtatgaaaagaagcatggtaccccgcagagcatccaggcagtcaaagag
aaggccgtggagtttgtggaagccaaaggcaccgaggatgcaaactaa
DBGET
integrated database retrieval system
