Xiphias gladius (swordfish): 120801048
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Entry
120801048 CDS
T07311
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120801048 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120801048 (prpf40a)
Spliceosome [BR:
xgl03041
]
Complex A
U1 snRNP components
U1 related factors
120801048 (prpf40a)
Complex B
120801048 (prpf40a)
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GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
120801048
NCBI-ProteinID:
XP_040003473
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Position
LG16:complement(12987408..13002683)
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AA seq
879 aa
AA seq
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MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTASTT
NGSPQEEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEATAPGTTTAPAVQADNTATM
ATVMEAETATAVSEEHLSQATVHHTAEVKTADAPLTSSESSAATEATASVEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFGELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDNEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcaccaccttatccaggtgtacca
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctccc
atcggaatgcctcctatgggacagcgacctcccagcatgactccaatgcctcctggtata
attcctcctggcataatgccaccgatgggggcacctccaatgggacagatgccaggcatg
atgccacctatgatgccggggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacgggaccgcctggtgttgactccacagctgctgcacctggaacagctagtaccaca
aatggatctccacaggaagaacagccaaagaagaagtccctgtggaccgaacacaaatca
ctggatgggaagacctattattacaatacagagaccaagcagtccacatgggagaaacca
gatgaactcaaatctcctgcagaacaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaattctcagacaaaggagtccagatggaccaaa
cccaaagaactggaggatctggaagctatgatcaaagcagaggagaatggaacggcagag
gcaacagcccctggcaccaccacagctcctgcagtgcaagcagataatacagccactatg
gcgaccgtaatggaggcagaaactgcaacagcagtctcagaggaacacctgtcccaggcg
accgtgcatcacacagctgaggtcaagactgcagatgcacctctgacttcctcagagagc
tcagctgccacagaggccacagccagtgttgaagtcacaaaggaagaacggccagaactt
cagaagaaaacctacaaatggaacacaaaagaggaggcaaagcaggccttcaaagagctg
ctgaaggagaagggtgtgtcctcaaactcctcttgggaacaagctatgaaaatgatcatc
aatgatcctcgctacagcgcgctccccaaactgagtgagaagaagcaggcgtttaatgcc
tacaaagtccagacagagaaggaagaaaaggaggaagccagaattaaatacaaggagtcc
aaagagacctttcagaggttcttggagaaccatgataagatgacatctaccactagatac
aagaaagcagaacagatgtttggtgagcttgaggtgtggagttgtgttccagagagagac
aggttggagatctatgaagatgtgttgttctacctggctaagaaagagaaggagcaagcc
aagcagctaagaaagaggaactgggaagctctgaagaacattctggacaacatggccaat
gtcacctatcgcaccacttggtctgaggcccagcagtacctgctagacaaccccaccttt
gcagaagatgaggagctgcagaatatggacaaggaggatgccctgatttgttttgaggaa
cacatccgggcactggagaaggaggaggaggaagagaaacagaagactcttctcagggag
aggagacgacaacgcaagaacagagaggccttccagaaatttctagatgagctccacgac
cacggccagcttcactccatgtctgcctggatggagatgtacccaaccctcagctcagac
atccgttttgccaacatgctgggccagccgggctccactccgctggatctgttcaaattc
tatgtggaagacttgaaggctcgttaccatgatgaaaaaaggatcatcaaagatattctt
aaagacaaaggcttcctggttgaagtcaacaccagctttgacgactttggatcagtcatc
agctcagacaagagagccaccacactggatgcaggcaacataaagctggccttcaacagt
ttactggagaaggctgaagccagagagagggagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagccttcaagaacatgctgaaacaggccacaccaccgctggagcca
gaggctacatgggagggagtcagagagagattcttaaaagaatctgcctttgaagacgtg
actctggagtcagagaggaaaaggatattcaaagacttcatgcatgtcttagagcatgaa
tgccaacaccaccactctaagacaaagaagcactcaaagaagtccaagaagcaccacagg
aaacgttcccgctctcgatcgggctcagagtctgaggatgaggaataccacaagaagaaa
aaaaggtcacagtccaaatccccctcagaacgctcctctagtggagaatctgagagaagc
tataagaaatccaagaagcacaagaagaagggcaagaagagacgccacaagtctgcatca
ccagattctgacaatgagaagaaaggaagagagcgcgatggaaagcgtgaaaaagaccta
gagaaagataaagagaacgacaagtctcgggggaaatctcgctccgactctaaacagaag
tctcctaaaaggaaagcagccaaagaggagggcggctgggatacctcaggcagtgagctg
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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