Xiphias gladius (swordfish): 120801200
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Entry
120801200 CDS
T07311
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120801200
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xgl01009
]
120801200
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xgl04515
]
120801200
Protein phosphatases and associated proteins [BR:
xgl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120801200
Cell adhesion molecules [BR:
xgl04515
]
Cadherins
Protocadherins
120801200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
120801200
NCBI-ProteinID:
XP_040003823
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Position
LG1:complement(24301154..24305125)
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AA seq
889 aa
AA seq
DB search
MFNSRHSSLSKRGGIWGLCILLLYTSPLSCFANFSQAKELIYKIKEGLPRGTFIGAIGVD
LNLDFTVEPPFLFSLPHKKVSEQYVNLNNTTGELYTSATEIDRETLCPENSGRKGCVLSL
DVFVLPQQYFQLIKVKILIEDLNDNRPKFPVDEICLSVPENAPINARYAVEQSAVDPDLG
LHGVQTYWLVNDFGMFTLDVEENEGGELTPFLIVTQALDRETHDEYITDIIAEDGGTPPL
LGAATLKIVITDVNDNCPHFTESQINVTLHGNTTKGTHLARLHAFDPDLGANAQISYTYS
ERVPSHSRTLFHLDRITGVIKLAGKIDTVTATFCKLTILANGPGCIPAVATVTVHIIKVV
TGPPAIIPRYIAQEKDGVVTIKESEPAFSPIAFFTVKNIDMNQRVDCHLEGSGPFRLGPY
QHFKNEYLLETTEPLDFEKIQEYELIVVARNTRGLVIKTFLKLQVLDENDNAPVFQQSLV
EISVEENNPPNTFLAQLQASDQDSKSRGEVIYLLGGDAPGIFVVDRVTGVLTVATSLDRE
EKETYRFIVRAVDQGIPRRESIATVVVTVQDRNDNSPRFINKDFTFFVPENFPGYGEIGV
LSVTDADAGENGWVALSILNGSDIFLIDTGRGTLRAKTSLDREQQGTYQLWIEAVDGGEP
ALSCVTMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPSTLPGTSITEVYAVDKDTGMNAVI
AYSIIKRKGGEPGSFDIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFF
VNETVSNESYIQSLLTREADIEIEERPWYIGQMTEGPERYELFPCQPVLIALSVTCLGLF
FLVVTLTSYICCKRFKKHRKKRLDVEIPLKMKNDSMQVVNRKLRQISNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacagcagacactccagccttagcaaaagaggaggaatatggggattgtgcatc
ctcttgctttacaccagccctctttcctgttttgcaaattttagccaagcaaaagagctc
atctataagataaaggagggattacccagggggaccttcataggggccattggagtagac
ttaaatttggatttcactgttgagcccccctttttattcagtctcccacacaagaaggtc
agtgaacagtatgtgaacctaaataataccaccggggagctttacacatctgctacagag
attgacagggagacactctgtcctgagaactcggggagaaagggatgtgtcctctcgctg
gatgtgtttgtgttacctcagcagtactttcagctcatcaaagttaagatcttaattgag
gacttgaacgacaacaggccaaagtttcccgtggacgagatctgcttgtctgtccctgaa
aacgcacccatcaatgcgcgttacgcagtggagcagtctgcagttgacccggaccttggt
cttcacggagtgcagacctactggctggttaatgactttggcatgttcacactggatgtt
gaggagaatgagggaggtgagcttacacccttcctcattgtgacacaggccttggacaga
gagacacacgatgaatacattacagatattattgcagaggatggagggactcctcctcta
ctcggcgcagctactttaaaaattgtcatcactgatgtgaacgataactgtccccacttc
acagagtcacaaattaatgtcactctgcatgggaataccaccaaagggacacatttggca
cgtttgcatgcttttgaccctgaccttggtgctaatgctcagatcagctacacttacagt
gaacgtgtgccaagccacagcaggaccttgttccatttggacagaatcacaggggtgatc
aagctagcagggaaaatcgacactgtcacagccacattttgcaaactcaccattctggct
aatggacctggctgtatccctgctgttgccactgttactgtccatatcatcaaagttgtc
actggaccccctgctattataccccggtacattgcacaagaaaaggatggagtggtgaca
ataaaggagtctgagccagcgttttctccaattgctttttttactgttaaaaacattgat
atgaaccaaagagtggattgtcatttggaaggcagtggtccctttaggcttggcccctat
cagcatttcaagaacgaatacctgctggagactacagagccattggactttgaaaagata
caggagtatgagctaattgttgttgctaggaatactcgagggcttgttatcaagaccttc
ctcaagttgcaggttttagatgagaatgataacgcaccggtgtttcagcaatctttggtg
gaaatatctgtcgaggaaaacaatccaccgaacacctttctagcccagctccaagcctca
gaccaggacagcaaaagccgaggggaagtcatctacctccttggaggtgacgcccctggg
atctttgttgtggatcgtgtgacaggtgtcctgactgtggccacatcactagaccgggag
gagaaagagacataccggttcatagtgagagcagtggatcaggggatacccaggagggag
tcaattgcaactgtggtggtgaccgtgcaagaccgcaacgacaacagtccacgcttcatc
aataaggactttactttctttgtgccagagaacttcccagggtacggtgagatcggggtc
ctctctgtgacagatgctgatgctggggaaaatggctgggtggccctttccatcctcaac
ggcagcgacatcttcttgatagacacagggcgagggacgctgagggccaaaacatcactg
gaccgtgagcaacaagggacctaccagttgtggattgaggccgttgatggtggggagccc
gcgctttcctgtgttaccatggtgaccgtgctgttgttggatgtaaatgacaacccaccg
attgtcctcttcccccagtccaatcagtcgtacatgctagtgctacccagtacattacca
ggaacatcaatcacagaagtgtacgctgtggataaggatacaggcatgaatgctgtgatc
gcctatagtatcattaagagaaaaggtggagagccagggtcatttgacattgacccagaa
acaggaaatatcacattaaagagggagctcagcaaccggggcctctacagccttctggtg
aaggtcagtgatcatggtcagcctgaaccgctttactcaacagtcatggttaacttcttt
gtcaatgaaacagtgagcaatgagagttacatccagagtcttctgaccagagaggcggac
atagagatagaggagaggccctggtacattggccagatgacagaggggcctgagaggtat
gagctgttcccctgtcagcctgtcctcattgctctttcagtgacatgtctggggctattc
ttcttggttgttacactgacatcttacatatgctgtaagaggtttaaaaagcacagaaag
aaaagattagatgtggaaatacctttgaaaatgaagaatgactcaatgcaggttgtgaac
cgaaagctcaggcagatctcaaacatctaa
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