Xiphias gladius (swordfish): 120801228
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Entry
120801228 CDS
T07311
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120801228 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120801228 (sf3b1)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120801228 (sf3b1)
Spliceosome [BR:
xgl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120801228 (sf3b1)
Complex B
120801228 (sf3b1)
Complex C
U2 SnRNP specific factors
120801228 (sf3b1)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120801228 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
120801228
NCBI-ProteinID:
XP_040003856
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All DBs
Position
LG16:complement(25494443..25512129)
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AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLLEDGEQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAAAQAVTKRKRRWDQTADQTPSNATPKKMSSWDQADTTAETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVFVRYELEYVL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatattgaggcccagatcctggagatccagggg
atgaaggcttccctgctggaagatggagagcagggagtgggccttgactccactggcttt
tatgaccaggagatctatggaggcagcgacagtcgctttgccggatatgtcacgtccatc
gctgccaatgaacaagaggatgatgatgaagacgatacatcaacaagcttgttgggacaa
aagaagccagggtaccatgcaccagtggcaatactcaatgccattcctcagtcagatgaa
caatatgacccatttgcagaacatcgtccgcagaagattgcagagcgggaagatgaatac
aaagcccggcgcagacagatgatcatctcacctgagcgtctcgatccttttgcagatggg
ggcaaaacgccggaccccaagctgcaggtcaggtcatacgtggacgtcatgttagagcag
aacctgtccaaagaggagagagagattcgacagcagctggcagagaaggccaaatcaggg
gacctgaaagctgtcaacgggtccgctgccgcccaagcagtcacaaagcgtaagcgtcgc
tgggaccagacagctgaccaaaccccctctaatgctacgcccaaaaagatgtccagctgg
gaccaggctgacaccactgctgagactccaggacacacccccgcacacaccccctcaaac
agccgatgggatgaaactcctggccgccctaagggcagcgagaccccaggggccactccc
agcacccgcatgtgggaccccactcccagccacacacctgcaggcgctgccacccctgga
agggacacccctggccacgccacacctggccatggtggagccacaggtagcgtgcgcaag
aaccgctgggacgaaaccccaaagacagaaagagagaccccgggacacgggagtggctgg
gctgaaaccccacgcacagacagaggagatgagtcggtgggtgagactccaaccccagga
gccagtaagaggaagtctcggtgggatgaaacccctgccagtcagatgggatcctcaaca
ccactgcttacccctggaaagacccccataggaactccagctatgaacatggccacccca
acaccaggtcacctgatgagcatgactccagagcagctgcaagcgtggcgttgggagaga
gaaatcgatgaaagaaaccggcctctcacagacgaggagctggatgccatgtttccagag
ggatacaaggtcttgcctccaccggcaggctacgtgccgatccgtacgccggcccgtaag
ctgtcggccacacccacccctattggaggcatgacgggtttccacatgcaggcggaggac
cgcaccacaaaacagatgaatgaccagccctcaggaaacctccccttcctcaaacctgac
gacatccagtattttgacaaactgctggtggaggtggatgagtccacgctgagccccgag
gagcagaaagagaggaagatcatgaagctgctgctgaaaattaagaatggaaccccaccc
atgaggaaggccgctctgcgtcagatcacagataaggctcgtgaatttggagcaggccct
ctgttcaaccagatcctgccactgctcatgtcgcccaccctggaggaccaggagcgccac
ctgctggttaaagtgattgaccgcattctctacaaactggacgacctggttcggccgtac
gtgcacaagatcctggtagtgattgagccgctcctgattgatgaggactactacgccaga
gtagaaggcagagaaatcatctctaacttggcaaaggctgctggcttggccacaatgatt
tccacaatgcgacctgatatcgacaacatggatgagtacgtcagaaacaccacggcccga
gcctttgccgtggtggcctccgccctcggcattccctccctcctgcccttcctcaaagct
gtgtgtaagagcaagaagtcctggcaggcccgacacacaggcatcaagatcgtgcagcag
attgccatcctcatgggctgcgccatcctgccccaccttcgcagcttggtggagattata
gaacacggtctggtggatgagcagcagaaggtgaggaccatcagcgccctggctatagct
gctcttgccgaagcggccacaccctatggtattgagtcctttgactcggtcctcaagccg
ctctggaagggtatcagacagcacagaggaaagggtttggctgctttcctcaaagccatt
ggttacctgatcccactgatggacgccgagtatgcaaactactacaccagagaggtgatg
ctgatcctcatcagagagttccagtccccggatgaggagatgaaaaagattgtactgaag
gtggtgaagcagtgttgtggcactgatggtgtggaggccaactacattaagactgagatc
ctgccgcccttcttcaagcacttctggcagcacaggatggccctcgacagacgtaactac
agacagttggtggacaccacagtggagttggccaacaaagtgggagcagcggagatcatt
tctcgcatcgtcgatgacctgaaagacgaggcggagcagtacagaaagatggtgatggag
accattgaaaaaatcatgggcaacctgggcgccgccgacatcgaccacaagctggaggag
cagctgatcgacggtatcctctatgccttccaggaacagacaacagaggactcggtgatg
ctgaatggctttggcacagtggtgaatgccctcgggaagcgtgtgaaaccctacctgcct
cagatctgtggtacggtgctgtggcgtctgaacaacaagtcggccaaagtccgtcaacag
gccgctgacctgatctcccgcacagccgtggtcatgaagacctgccaggaggagaaactg
atgggtcacttgggcgtggtgctgtatgagtacctgggagaggagtaccctgaagtgctg
ggtagcatcctgggagcactgaaggccatcgtgaatgtcattggtatgcacaagatgacc
ccaccaatcaaagacctgcttccccgtctgactcccatcctgaagaacagacatgagaaa
gtgcaggagaactgcatcgacctggtgggcaggatcgctgacaggggtgctgagtatgtg
tctgccagggagtggatgaggatttgttttgagctgctggagctgctcaaggctcacaaa
aaggccatccgccgagccactgtcaacacgtttggttatatcgccaaagccattggtccc
cacgatgtcctggccactctgctcaacaacctgaaggtccaggagcgtcagaacagagtc
tgcaccaccgtggccatcgccatcgtcgccgagacctgttcaccgttcacggtgctgccg
gcgctcatgaacgaataccgcgtgcctgagctcaacgtgcagaacggcgtgctcaagtcc
ctctccttcctgttcgagtacatcggagagatgggcaaagactacatctacgctgtcacg
ccgctgctggaggacgcgctcatggacagagacttggtccacaggcagacggccagcgct
gtggtccagcacatgtccctgggcgtctacggtttcggctgcgaggactcgctcaaccac
ctgctcaactacgtgtggccaaacgtatttgagacgtcgcctcatgtgatccaggctgtc
atgggggccctggaggggctgagggtggccattggaccctgccgcatgttgcagtactgc
ttacagggtttgttccatccggcccggaaggtgagagacgtctactggaagatttacaac
tccatctacatcggctcacaagacgccctcatcgcccactacccacaagtctacaacgac
gagaagaacgttttcgtccgctacgagctcgagtacgtcttgtaa
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