KEGG   Xiphias gladius (swordfish): 120801496
Entry
120801496         CDS       T07311                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl04382  Cornified envelope formation
xgl04510  Focal adhesion
xgl04512  ECM-receptor interaction
xgl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120801496 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120801496 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120801496 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    120801496 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xgl04147]
    120801496 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:xgl00536]
    120801496 (col4a1)
Exosome [BR:xgl04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   120801496 (col4a1)
Glycosaminoglycan binding proteins [BR:xgl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   120801496 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 120801496
NCBI-ProteinID: XP_040004513
LinkDB
Position
LG16:complement(17505623..17549189)
AA seq 1641 aa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NT seq 4926 nt   +upstreamnt  +downstreamnt
atgctgttaccgtccggcaccctgctactgctggcggctctctactcaagtgtagacttg
acaggggctgagggttgcgggccttcttgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgagcggggatttcctggtcttcaaggtaatatgggattcccagggatgcag
ggacctgaggggcctccagggccaatgggccacaagggagatctgggtgaacctggggct
cctggactgaaaggagtgaggggtccccctggtctgccaggtttcccaggaaacccagga
caaccaggcatcaatggacacgatggcccaccaggtccaccaggtatcccaggatgcaat
gggactaaaggagatatgggaagggatggcagtcctggttttcctggtcttcaaggacct
ccaggcatcccaggatttcctggaatgaagggtgaccctggtggtgtgattgggattgat
atccagaagggagaaagaggattccctggcaatcctggattacctggatcaattggacct
cctggacctaccggacctccaggacttcgtggctatcatggacccaaaggtgatcctggc
cctcctggccctccaggagagaagggtgacaagctggcttttgtgagtgagaaaggagaa
aagggtgagccaggatttcgtggcccacccggtccccctggacctccatcaatgggtgtg
gaaggaggacataccacagtacatatacctggaccaccgggagacagaggacttcctgga
gagaaaggagataaaggcttttgcatcccgtatctcgatggcatgaaaggtgaacccggc
ccgcctggaccaagaggtaaacctggcaaggatggagagggtgggccaaagggagaaaaa
ggctttccaggaattcctggaaacattggttcccagggtgaaaaaggagaaaaaggacca
ccaggttttgttaatggtgcccctggtcctcctggtcctcctggtttcccagggttacaa
ggagaaaaaggttttcctgggcctcagggagaggcaggtccaccaggccgccacactgaa
gggcctcgaggagagaagggtgagaagggagacgagggtgtgaaaggagacaggggtata
gaaggagagtctctggttggacctccaggacaaccaggggtcactggaccccctggaccc
ccaggactcccaatcgacgataatgactgtaacatcgagaaaggctctcctggcccacct
ggacctccagggttacaaggggaagtgggacagaaaggtgacaaaggagatacctgtgtt
cagtgtgaatcttttggcccacctggattacctggtccccaggggcctaaaggagagcat
ggacctcctgggccagtaggaagcaaaggagaaaagggtcaatctggtgctcctggacaa
cctggaagacctggtattcaaggaactcctgggttgatgggggctcctggggctattggt
gagcccggggacattttcatagctcctggtctgaagggagacaaaggtcttcctggtcct
gctggttcaccagggcaaccaggattggatggacagccagggattgatggcctccccggt
atacctggcctcaaaggagaacctgccaaagagggcattaagggtgagcgtggaccaggt
ggggatcctggtcttattgggcccccgggagagaggggtccccctggtctgccaggcatt
ggtcaaccgggagaaagtggagagaaaggcagtcaagggagaccaggacttcctggaact
cccggacaacctggtgccaaaggtgagccaggtgtaggtataagcactccaggtcctcag
ggagtacctggaccacgaggagaaactggcagacctggacttcaaggggatagaggcccg
gtgggagactcagggttgccaggtttccctggacagaagggtgaacaaggaccccctgga
attggttttccaggcccaacgggtcaaaaaggaatcagtggaattccaggagctccagga
ttaaaaggagagccaggaagaccaggacagagtggcttgactggacaacctggtctactt
ggacaaaaaggtgaaccaggacagggtcttccaggcccaaaaggttcgcagggcctccca
ggacttcctggcttccagggagagaagggtaacattgggcttcctggtattcctggaagg
gagggcgagacaggaccaccaggacctcagggaatcaaaggtggcgtgggacccccaggg
cctcctggattggttggcttaccaggtgcaccaggaaaaggctcacctggagctcccgga
ccacagggaccaactggagagcctggaccacacggtaatgacggtctaaagggagaaaag
ggcttccctggtcctcctggtctggacatgccaggacctcagggagaaaagggaatcccc
ggattcccaggacccacaggctctaaagggttgccagggcctccaggtttaccaggcagg
gatgggctgataggaaaccaaggtcctaaaggtgaaatgggggtcattgggacaccagga
ataccgggttttcccggacgacctggcacacctggatctcctggtctgagaggtgatccc
ggtattactggaccaagaggtgatattggagagcctggacctaaaggagaaaggggagaa
ccagggcttcagggacctcctgggaacatgagcaaagtcgacatggagcacatgaagggg
gagaagggagacatcggagacgcaggtaaccctggggtcactggagagaagggctaccgt
ggagttcctggagaccctggaatgccaggcaaagatggagagcatggattacctggacat
ccaggtgacaaaggagaccctggctttcctggagagcctggcagtatgggaccacctgga
cagaagggcagcgtaggagagatgggaataccaggtgggactggtccaaaaggtactaaa
ggagacattggtacaccgggacatccaggattcagaggcacagaaggacagaaaggagac
aggggagcagctggtgagccaggtatcgggatcccaggacatccaggagaaaagggtcag
acaggccagccaggattcccaggatcaccgggagagaagggtcagaagggtcatgagggt
atgcctggcaaaccaggaacgcaaggagccaaaggagaaaaaggaaccatcgggtatcca
ggtcagccaggcagaccaggtgaaaagggtatccctgggcttcctgggtctgcaggagaa
cctggtcatgaaggccggcctggtgaaggcggcttgcagggacctcctggtcttcccgga
gagaagggagagcctggggtggatggcatccctggatcctcaggggagaggggagaccca
ggtttacctggcctaggtttacccgggtcacctggagtgcttggaaacaaaggtgacaaa
ggtagtcctggcttccctggcactccaggtcagccaggtgtccctggtatcaaaggcgac
aagggaattccaggccaacaggggccacagggtgagccaggagagagggggatccaaggt
acttctctagagggccctaagggagaaaggggagaaacaggacaacctggagaagcagga
tccccaggagcaccagggcctgttggtgtgccaggcaaacatggccaaaagggagagaaa
ggagatcagggtctccctggtttccagggagagataggacataagggtgactctggatct
cctggacttcctggacaagctggcctgccaggtatcgatggacagaagggagagagggga
tcacagggtgtcccaggcttcccgggtgcaaagggtaatgtcggggacggtggattcaaa
ggagagattggagacagaggattcccaggagaaaaaggtaatgaaggccctcctggtccc
cctggccctcataccttcatcaaaggagacatcgggttcccaggaattcaaggtcttcca
ggaccacaggggccgtctgggttccctggacagaaaggacagcaaggtatgacaggtatt
ccagggccaaaaggtgaagaaggcctccctggatatcatggtcatcctggagccaaagga
gaggctggccttccagggccacaaggacccagaggacacccaggccccccgggacctgat
ggtgttccaggtcaagcgggtccacctggcccctcctccatggatcatggtttcctggtc
acccgtcacagccaatcggtggaggttccactttgtcccaagggaacctctgtcatatat
gatgggtactccttgctctacgtacaaggcaacgaacggtctcatggacaggacttaggt
acggcaggcagctgtttaagaaagttcagccccatgcccttcctgttctgtaacatcaac
aacgtgtgcaactttgcctctcgtaatgactactcctattggctcacctcccctgagccc
atgcccatgagcatggcgcctatcactggccaaagcatcaaacccttcatcagcaggtgt
gctgtgtgtgaagccccagccatggtgatagcagttcacagtcagaccatcatgatccct
ccatgccctcacggctgggactctctgtggattggctactcctttgtaatgcacaccagc
gctggtgctgagggttcaggccaggctctggcctctcctggttcctgtctggaggaattc
cgcagtgctccattcatcgagtgtcacgggcgtggaacctgcaactactacgccaactcc
tatagcttctggcttgccaccatcgaagacaatgagatgtttacgaaacctgtcccaaca
acgctaaaagcgggcagtctcagaacacacataagccgctgtcaggtgtgcatgaagagg
acataa

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