Xiphias gladius (swordfish): 120802374
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Entry
120802374 CDS
T07311
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120802374 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120802374 (lig3)
Enzymes [BR:
xgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120802374 (lig3)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
120802374 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120802374
NCBI-ProteinID:
XP_040006051
LinkDB
All DBs
Position
LG17:complement(4597808..4613355)
Genome browser
AA seq
1009 aa
AA seq
DB search
MQRPLTLLAPNTVCAGLQALRTSARCQQLLKACRSLPVSPCFVRQPKPVYVLREICNFSS
VSHKHSLLQNYPPRLPLHQCFSSEPDMAEQRFLVEYAKRGTAGCKKCKDKIQKGIVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKHV
SDLMAKVSASPKKKVQAKLNTTGQLKAPPADPSVNAPRKFSGFTAAKAGASSSSGPSSSS
PAKASQGSALSSQLCDPKHKDCLFREFRKLCAMVAENNSYNVKTQIIEKYLKKGSGGDKF
HGDLFLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRCDQDAMVRDLEQGDVSETVRMFFD
DSESFPPAAKSLLTLQEVDASLTRLAQLTKEDEQQSELEDIAKKCTSNDLKCIIRLIKHD
LKMNAGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTVEASLMT
PVQPMLAEACKSVEYAMKKCPNGMYSEIKYDGERVQVHKNGDNFSYFSRSLKPVLPHKVA
HFKEYIPQAFPGGHSIILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNGVSLMERPLCERRKFLHDNMVEVPNRILFSEMKHVTRARDLADMITRVIREGLEGLVL
KDIKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPD
SKKWCTVTKCSGGYDDATLARLQKELDVIKISKDPSKIPGWLKIIKNYYPDFIIRDPEQA
PVWEITGAEFSKSEMHTADGISIRFPRMTCIRDDKDWKSATNLHQLKELYRISKENCDFK
VTVGPSTSNDDKGSSGGDSEGNSPSSSSHRGAPPKKTSNSTPPKPKAAKSQPRAPGAEAP
IAKKVKKSESVHSNGQTKTKATSQLLEPRNDKTLMDIFSGVRLFLPISVQDFDKLKRYFV
AYDGDLVPDYDTASATHTLAEPEVNSQAQRVTPSWIWECIRKRRVVPPC
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacctctcactttattggctcccaacactgtctgtgcaggcctacaagctctt
cgaacatccgccaggtgtcagcaactcctgaaagcgtgtagatcccttcctgtctctcca
tgctttgtacgtcagcccaagcccgtttatgtgcttagggaaatctgtaatttttcctcg
gtgtcccataaacacagcctcctccaaaactatcctccccggcttcccctgcatcagtgc
ttctccagcgagccagatatggcagaacagcggttccttgtggaatacgccaaacgcggc
acagcaggttgtaagaaatgcaaggacaaaatccagaagggcatagtgcgtatagggaag
attgtgccaaaccctttcagtgagtctgcaggggagatgaaagagtggtatcatgtgaag
tgtatattcgagaagctggagagggcaagagccaccacgaagaagatcgaggacatcaca
gatctggagggctgggaggagctgcaggatgaggacaaggagctcattaataaacatgtt
tcagacctgatggccaaagtcagtgcaagtccaaagaagaaggtgcaggccaagttgaac
accactggccagctgaaggctcctcctgccgacccatctgtcaacgctcctcgcaagttt
tcaggcttcactgctgcgaaggccggcgcctccagcagctcagggccgtcatcctcttcc
cctgccaaagccagccagggcagcgccctgtccagccagctgtgtgaccctaagcacaag
gactgcctcttcagagagttccgcaagctttgcgccatggtggcagaaaacaacagctac
aatgtcaagacacagattattgagaaatatctcaagaagggctcaggtggagataagttc
catggagacctcttcctgacagtgaaactgctcctgccaggcgttgtaaaaagtgtctac
aacctcaatgacaagcagatcgtaaaactcttcagccgcatattcagatgcgaccaggat
gccatggtgcgcgatctggagcagggcgatgtatctgagacggtgaggatgttcttcgac
gacagtgaatcgtttcctccggctgcgaagagcctactgaccctccaggaagtggacgca
tccctgacccgcctcgcccagctgaccaaggaggatgagcagcagtccgagctggaggat
attgccaaaaaatgcaccagtaatgacttgaaatgcatcattcgactcattaagcacgac
ttgaagatgaacgccggagcaaaacatgtcttagatgctgtggatccaaacgcctatgat
gccttcaaggcttcgcgtaatctgggtgatgtgattgaacgggtgttgaggaatcagcag
gaggcgtccaacggttcagggcccaggaaactcctcactgtggaggcctctctcatgacc
cccgtgcagcccatgttggcagaggcatgtaaatccgtagagtacgccatgaagaaatgc
cccaacggcatgtactctgagatcaagtacgatggagaacgtgtgcaggtccataagaac
ggagacaacttcagctacttcagccgcagcctcaaaccagtgttaccgcacaaagtggcg
catttcaaagagtacatccctcaggcatttcccggcggccacagtataattttggacgct
gaagtcctcctaattgacacaaagaccagtaaacccctgccctttgggaccttgggtgta
cacaagaaagcagcctttcaagatgccaatgtgtgccttttcgttttcgactgtatctac
ttcaatggagtgagtctcatggagaggcctctgtgtgaacgcaggaagttccttcatgac
aatatggtggaagtccccaacaggatcctgttctcagagatgaagcatgtcactagggca
agagatctggctgatatgataactcgtgtcatcagagagggacttgaaggcctggtgcta
aaagacataaagggcacctatgaaccaggaaagcgccactggctgaaggtgaagaaggac
tatttgaacgaaggtgcgatggcagacacagctgacctggtggtgctgggggccttctat
ggaaaaggctcaaacgggggcatcatgtccagttttttaatgggctgttatgacccagac
tccaagaaatggtgcacagtcaccaagtgctctggaggctacgatgacgccaccctggcc
aggctccagaaggagctggatgtgatcaaaatcagcaaggacccaagcaaaatcccaggc
tggttgaaaataatcaagaactattatccagatttcattatccgcgatcctgagcaagca
cctgtctgggagatcacaggcgcggagttctccaaatcagagatgcacaccgccgacggc
atctccatccgctttccacgcatgacgtgcatccgcgacgacaaggactggaagagtgcc
accaacttgcaccagcttaaagagctgtaccgcatatcaaaggagaactgtgacttcaaa
gtcacagtgggaccgtctacatccaacgacgacaaaggctcatcaggaggggacagcgaa
ggaaactccccatcgtcctcgtcccacagaggtgctcctcccaagaagaccagcaacagc
actccacccaaaccaaaggcggcgaagtcccagcctcgcgctcctggcgcagaagcaccc
attgccaagaaggtcaagaagagcgaaagtgtacacagcaatggccagaccaaaacaaag
gcaacctctcagctgctggagccaagaaatgacaagacactgatggacatcttcagcggg
gtgaggcttttcctgcccatctcagtgcaggactttgacaagctgaagcgctactttgtg
gcgtatgacggagacctcgttccggactacgacaccgcctcagccacacatactctggct
gaacctgaggtgaacagccaggcccagagagtcacacccagctggatctgggaatgtatc
cgcaagaggcgcgttgtacctccctgttaa
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