Xiphias gladius (swordfish): 120802763
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Entry
120802763 CDS
T07311
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03030
DNA replication
xgl03420
Nucleotide excision repair
xgl03430
Mismatch repair
xgl03440
Homologous recombination
xgl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120802763
03420 Nucleotide excision repair
120802763
03430 Mismatch repair
120802763
03440 Homologous recombination
120802763
03460 Fanconi anemia pathway
120802763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120802763
03032 DNA replication proteins [BR:
xgl03032
]
120802763
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120802763
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120802763
DNA replication proteins [BR:
xgl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120802763
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120802763
MMR (mismatch excision repair)
120802763
DSBR (double strand breaks repair)
HR (homologous recombination)
120802763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
120802763
NCBI-ProteinID:
XP_040006823
LinkDB
All DBs
Position
LG17:8488434..8526203
Genome browser
AA seq
727 aa
AA seq
DB search
MSVTLTQGAIEALFNGSELNNPVLQLLSMRQISNASGPPRFRLMMSDGQHYWSSFLLATQ
LNTLAEENLLVPNCVCTLKKTITNTLSDGRHVVIVMGIEILQSAEETGGKIGNPTAYNAD
DKTSCPQNSGSGTSVSASPPSAAVPGPSYKNNSTAHSPPRGRGRGFVGKSPKKAPPMTFS
PKKASPMTFSPTKASPMTFSPTKASPMTFSPTKATSTSPGSSAKVIPIANLNPYLSKWTI
RARVTNKSNVRTWNNSRGEGKLFSFEIVDESGEIKITAFNKEVDKFFSLVEQGKVYYISK
ATLKVANKQYTTLKNDYEMTLHAHSSIIPCDDSQGVPTAHCDFVPIAELENRDKDAIIDI
IGVCKSAEDVSRITTKTSREVSKRALNLIDTTGKVVTVTLWGDEAEKFDGSGQPVVAIKG
ARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDQKGYALNSQSLTNTRSAGSEAKMN
WKTLSDVKSEHMGQGEKAEYFSCVATVLYTRKENCLYQACPSADCNKKVIDQKNGLYRCE
KCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEALLGHSAETLGQFRDTDEAAFDEV
FQKANFTTHIFKNRVKLETYNEKWWPPRWWTSGLSKKVSTGSVCHFTALLCVVCLSFEMR
KRRCCVCTCFNPHRPRQDPPPQFNRVTVAISSNVPSHFISFKTANCLYQIGLKGINCITR
HNKHFNH
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaacacttacacagggggcgattgaggccctgttcaacggctcagagttgaac
aatcccgtgctgcagctgctgagcatgcgtcagatcagtaatgcctctggcccacccagg
ttccggcttatgatgagtgatggtcagcactattggtcttccttcctgctggccacccag
ttaaacactctggcagaggaaaacctcctggtaccaaactgtgtgtgtacgctgaagaag
accatcaccaacacattgtcagatggcaggcatgtggtgattgtgatgggcatagagata
ttgcaatcggctgaggaaactggagggaagattggaaatcccacggcatataatgcagat
gataagacgtcatgtccacaaaattcaggttcaggcacctctgtctcagcatcccctcca
tcagctgcagtacctggaccctcctataagaacaacagcacagcccattctcctccccgc
ggccgtggaagaggttttgtgggaaagtcacccaagaaggctccacccatgacgttttca
cccaagaaggcttcacccatgacgttttcacccacgaaggcttcacccatgacgttttca
cccacgaaggcttcacccatgacgttttcacccacgaaggctaccagcacttctccaggc
tcttcagcaaaagtgattcctatagctaacctcaacccctacctaagcaagtggactatc
agagcccgagtcaccaacaagtccaacgtccgcacctggaataactccagaggagagggc
aagctcttctcctttgagatagtggatgagagtggagaaatcaagatcacagctttcaac
aaagaagtggacaagtttttctctctagttgagcaaggcaaggtgtactacatctccaag
gctacgctgaaggtggccaacaaacagtacaccacactgaagaacgactatgagatgacc
ctccatgctcattcatccattataccgtgtgatgacagtcagggcgtccccacagcgcac
tgtgactttgtgcccatcgcagagctggagaacagagacaaggacgccatcattgacatt
attggagtgtgcaagagtgcagaggatgtatcccgtatcaccactaagaccagcagagaa
gtctccaagagggccctcaacctaatagacacaactggcaaagtagtgacagtcacactg
tggggagatgaggcagagaagtttgacggctctgggcagcctgtggttgccatcaaagga
gctcgcttgtctgattttgggggcagatctctctctgctttgttcagctcaacagtcatg
gtcaacccagacataccggaggcctttagattgagagcctggtatgaccagaaaggctat
gcactcaacagccaatccctgacaaacacaaggtcagcgggcagtgaagcaaagatgaac
tggaaaacactgagcgatgttaagagtgaacacatgggacaaggagagaaggcggaatat
ttcagctgcgtggcgacagtgctgtacactcgtaaggagaattgtctgtaccaggcctgt
ccatcggcagactgcaacaagaaggtcatagaccaaaagaacggactgtaccgctgtgaa
aagtgtaatagagagttccccaacttcaaatacagactcctactttctgccaacttagca
gacttcggggataaccagtgggtgacatgcttccaggagacagctgaggccctgttaggt
cacagcgcagaaacactgggacagttcagagacacagacgaggctgcatttgatgaagtc
ttccagaaagctaacttcacaacgcacatatttaaaaacagagtcaagctggagacatac
aatgagaagtggtggcccccgcgttggtggaccagtggactgtcaaaaaaagtttcaact
ggctctgtctgtcactttaccgcccttctctgtgttgtgtgcctgtcatttgagatgcgc
aagagaaggtgctgcgtgtgtacctgtttcaaccctcaccgaccccgccaggaccccccc
ccccaattcaacagggttacagtggctatttcaagtaatgtaccgagtcactttatctcg
ttcaaaacagctaactgcctataccaaatcggtttaaaaggaattaattgcataacaaga
cacaataagcactttaaccattaa
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