Xiphias gladius (swordfish): 120802932
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Entry
120802932 CDS
T07311
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120802932 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120802932 (smfn)
03009 Ribosome biogenesis [BR:
xgl03009
]
120802932 (smfn)
Messenger RNA biogenesis [BR:
xgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
120802932 (smfn)
Ribosome biogenesis [BR:
xgl03009
]
Eukaryotic type
Pre-60S particles
RNases
120802932 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
120802932
NCBI-ProteinID:
XP_040007051
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Position
LG17:complement(27596217..27608073)
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AA seq
299 aa
AA seq
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CDEIVFTTVQIESRPRMPVCLRTSAWALTPWIFLCRKRRFVLWSTKAAYHSNYIRVLLED
LPVSRLINLLTGQATGPGIISRFGSSFDAQVSRRFSMSSTAMSQRMVWVDLEMTGLNIEK
DQIIEMACIITDSDLNILAEGPNLIINQPDELLEGMSDWCKEHHGKSGLTQAVRDSKITL
EQAEYEFLSFVRQHTPPGQCPLAGNSVHADKRFLDKHMPQFMYHLHYRIIDVSTIKELCR
RWFPEEYKMVPHKKATHRALDDIRESIKELQYYRANIFKASTEEKKRKIIENGGGSNKS
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
tgtgacgaaattgtttttacgacagttcagatcgaaagtcggcccaggatgccggtgtgt
ttgcggacttcggcatgggccctcactccttggatatttctttgcaggaagagacggttc
gtcctctggtctaccaaggcagcgtaccattcaaactacattagagttttgctagaagac
ttaccggttagccgattaataaacctactgaccggacaggcaacaggccccggcattatc
tccagattcggctccagttttgacgcacaggtgtccagaagattcagcatgtcgtccacc
gcgatgtcccagagaatggtgtgggtggacctggagatgacaggtctcaacattgagaag
gaccagatcattgaaatggcatgcatcatcacagactctgacctgaacattttggctgag
gggcccaacttaataatcaaccagccagacgaattgctggaagggatgtcagattggtgt
aaagagcatcatggaaagtcaggactgacccaggctgtacgggacagtaaaatcaccctg
gaacaagcagagtatgagtttctgtcctttgtcagacagcacaccccacccgggcaatgt
ccccttgctggtaactctgtgcatgcggacaaaaggttcctggacaagcacatgccacag
tttatgtaccaccttcattacagaatcattgacgttagcaccatcaaggagctttgcaga
cgatggtttccagaggaatacaagatggtacctcacaagaaagccacccacagagccttg
gatgatatacgggagagcattaaagagctgcagtactacagagccaacatcttcaaagca
tcaacggaggagaagaagcgcaagattatagaaaatggcggcggcagcaacaaaagttag
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