KEGG   Xiphias gladius (swordfish): 120802932
Entry
120802932         CDS       T07311                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    120802932 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xgl03019]
    120802932 (smfn)
   03009 Ribosome biogenesis [BR:xgl03009]
    120802932 (smfn)
Messenger RNA biogenesis [BR:xgl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     120802932 (smfn)
Ribosome biogenesis [BR:xgl03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    120802932 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-GeneID: 120802932
NCBI-ProteinID: XP_040007051
LinkDB
Position
LG17:complement(27596217..27608073)
AA seq 299 aa
CDEIVFTTVQIESRPRMPVCLRTSAWALTPWIFLCRKRRFVLWSTKAAYHSNYIRVLLED
LPVSRLINLLTGQATGPGIISRFGSSFDAQVSRRFSMSSTAMSQRMVWVDLEMTGLNIEK
DQIIEMACIITDSDLNILAEGPNLIINQPDELLEGMSDWCKEHHGKSGLTQAVRDSKITL
EQAEYEFLSFVRQHTPPGQCPLAGNSVHADKRFLDKHMPQFMYHLHYRIIDVSTIKELCR
RWFPEEYKMVPHKKATHRALDDIRESIKELQYYRANIFKASTEEKKRKIIENGGGSNKS
NT seq 900 nt   +upstreamnt  +downstreamnt
tgtgacgaaattgtttttacgacagttcagatcgaaagtcggcccaggatgccggtgtgt
ttgcggacttcggcatgggccctcactccttggatatttctttgcaggaagagacggttc
gtcctctggtctaccaaggcagcgtaccattcaaactacattagagttttgctagaagac
ttaccggttagccgattaataaacctactgaccggacaggcaacaggccccggcattatc
tccagattcggctccagttttgacgcacaggtgtccagaagattcagcatgtcgtccacc
gcgatgtcccagagaatggtgtgggtggacctggagatgacaggtctcaacattgagaag
gaccagatcattgaaatggcatgcatcatcacagactctgacctgaacattttggctgag
gggcccaacttaataatcaaccagccagacgaattgctggaagggatgtcagattggtgt
aaagagcatcatggaaagtcaggactgacccaggctgtacgggacagtaaaatcaccctg
gaacaagcagagtatgagtttctgtcctttgtcagacagcacaccccacccgggcaatgt
ccccttgctggtaactctgtgcatgcggacaaaaggttcctggacaagcacatgccacag
tttatgtaccaccttcattacagaatcattgacgttagcaccatcaaggagctttgcaga
cgatggtttccagaggaatacaagatggtacctcacaagaaagccacccacagagccttg
gatgatatacgggagagcattaaagagctgcagtactacagagccaacatcttcaaagca
tcaacggaggagaagaagcgcaagattatagaaaatggcggcggcagcaacaaaagttag

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