Xiphias gladius (swordfish): 120802950
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Entry
120802950 CDS
T07311
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120802950 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xgl01009
]
120802950 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xgl04515
]
120802950 (pcdh1a)
Protein phosphatases and associated proteins [BR:
xgl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120802950 (pcdh1a)
Cell adhesion molecules [BR:
xgl04515
]
Cadherins
Protocadherins
120802950 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Syndecan
Motif
Other DBs
NCBI-GeneID:
120802950
NCBI-ProteinID:
XP_040007082
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All DBs
Position
LG17:complement(19930696..20015852)
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AA seq
1190 aa
AA seq
DB search
MELNLRVVLFWVLVLHCGSAKGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRSLAKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFSIPLATDRDSERNGVADYALTAGPDAATL
FGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTVKAVDGGNPQRYSSALLRVVVTDANDN
SPKFEKSTYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQAVDPVPKLLRIDRST
GIIYVKGPLDREEISSLSFYVMAKDKGPQPKSSKTFVSIEVTDQNDNAPAVEIRGIGLVT
HSEGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSSDNKRKY
FLQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSPTLFEVDFP
EENQPGEKVLDVTALDADSGTNAELLYNIVADSSIKGLFEIDPNTGEVRARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
LDVDKGENARVRLSVEPDGGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGVTINVLDENDNDPVVTKPSNSSFKRLSPLASPDSHVEVVEAEDLDSGPNAELVFSI
AGGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPARHATALVHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDNGFAAQRSNILFGSLAGVAGVVMLILVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQAPKNAKGKRGRKGKPQKSPKPLGEEEEVSLQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAA
NTFVGTGGDDNSTGSDQYSDYSYKTSQPKYNNKQHPHRRVTFSTTNPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSLPDVAMTGN
CTTECSELGHSDACWMPGHPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGGEEHR
SRLPPSRSAYSSSGHDASQDCPLEEMPLSVASEFPPTSPSAHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaatttacgagtagtgctgttttgggtcctggtgttgcactgtggctctgct
aaaggcagtatcctgtaccgggtccaggaggagcagcctcccaacactcttatcggtagc
ctggcagcagaccagggactgccagactcgggtcacctctacaagctggaggtgggtgcc
ccttacctccgtgtcgatggaaagacgggagacattttcaccacagagattcccatagac
agggaaaccctgagagactgtcgatcactggctaagggtaagccctgctacctggaattt
gaagtatcagtcacagatctgatacaaaatcagagcccacgactaattgaaggacgcatt
gaggtacaggacatcaatgacaataccccacaatttccctcttctgtgctaaccatctct
gttcccgagaacacgatcatgggggcactattctccataccattagctacagacagggac
tcagaaaggaatggcgtggctgactatgcgctgacagcagggccagatgcagcaacccta
tttggtttacaagtggctgatgacaggggagggaaactcccacaactgattgtgcttggc
aacctggatcgcgagttaaaggattcctacgacctcacagtaaaggcagtggatggagga
aacccacagcgctacagcagtgctttgcttagagttgtagtcaccgatgccaatgataac
tctcccaagtttgaaaagtccacatatgaggctgaagtttcggaaaatagtccagtggga
cactctgtgttgcaggtcaaagcaaatgactctgacatgggccctaatggagaaattgag
tacacccttcaccaagcagtagacccagtgccgaaactcttacgaattgatcgatccact
ggtattatctatgtcaaaggaccactggacagggaggaaatcagcagcctttccttctat
gtgatggcgaaggataagggtcctcaacctaaaagctctaagacatttgtaagcattgag
gtgactgaccaaaatgataatgctccagctgtggagattcgtgggattggtcttgtgaca
cacagtgaaggagtggctaacatttctgaagacatgccagtggggacagccgtagctttg
gtgcaagtgtctgacaaggatgagggagagaatgccgtggtcacttgtgtggttgcagga
gatgtgcccttccagctccgccctgccagcgactcatccagtgacaacaagaggaagtat
ttcctacagaccaccactcctcttgactatgaaagggttagagattacagagtagagatt
gtggctgtggattctggaaatccagcactctctagtacaaattcattgaaggtgcaggtg
accgatgtgaatgataactctccagtattctccccaaccttgtttgaggtagattttcct
gaagaaaaccaaccaggggagaaggttttggatgttacagctttggatgctgacagtggc
actaacgcggaactcctctataatattgtggcagactcatccatcaaaggtctatttgag
attgacccaaatacgggtgaagtaagagcccgaagcccacttgatcgtgagcataaagaa
cgatatgagtttcgggtcacagcagcagataaagggtcacctgttcataaaggaacagca
actgttgtaataaaagtccttgaccgcaacgacaatgaccccaagttcatgcttagtggc
tacagcttttcagttttggaaaacatgcctcccctcagtccagttggcatggtgacagtc
ctggatgtggacaagggtgagaatgcacgtgttcgcctctctgtagagcctgatggaggg
aagtttgttgttcaaaatggaacgggcaccattctctcaagcatttcatttgacagggag
aaagaaagcagctacacttttcgtctaaaagcagtggatggaggggagccacccagatct
tcatatgtgggtgttactatcaatgtactggatgaaaatgacaatgaccctgtggtcacc
aagccctccaattcctccttcaagcgtttgtcacccttagcctccccagatagccatgtg
gaggtagtggaagctgaagatctggacagcgggcctaacgcagagctggtcttcagtatt
gctggtggaaacccttaccagttatttcgcatatccccttccagtggggagatcactcta
gcaaaggagatgacccgaaaacatggtggactacatcgcctagtggtgcgagtgagtgac
aggggtaagcctgcacgtcatgccactgccctggtccacatctatgtcaatgaaaccatt
tcaaatgtcagcttagtggaagccctagttggacacagtctttacactccactggacagg
gacattgctggtgatcctgacaatggttttgctgcacagcgtagtaacattttgtttgga
agccttgctggtgtggcaggtgttgtcatgttgattttggtggtggtatttattcgacac
cgcatccagagagaaactaagagtgggtatcaggctggcaaaaaggaaacaaaggactta
tatgcacccaaacaggcaccaaagaatgccaaaggcaaacgaggaaggaaaggcaaaccc
cagaagtccccaaaaccactcggggaagaggaggaggtcagccttcaaaagagtctcaaa
ttcaaccttgatggagtcaatgatagccccaggatacacctacccttaacatattcacca
ggaagccctgatataggcaggcactaccgctccaactcccccttaccctccatccagctg
caggctcaatccccctcagcctcacagaagcatcaggctgtccaggacctgcccgctgcc
aacacctttgtaggaacaggcggagatgacaactctactggctcagaccagtactcagac
tacagctacaagacaagccaaccgaagtacaacaacaaacagcatccccatcggcgagtg
accttctccacaactaaccctgtgcaggacctgcaggatgcctctcagcacagctactat
gacagcggcttggaggaatcggagactcccagcagtaaatcatcgtctggtcctcgcatc
ggacccctgaccctgcctgaggaccactatgagagaaccactccagatggcagcattgga
gagaccgaacacccggaaaatgatatccgctccctacctgatgtggcaatgaccggaaac
tgtacaacagagtgcagcgaattgggccactcagacgcctgctggatgcccgggcatccc
tcccctgtacgcaagaccaggaacccccccaaactctccaccttcgtgccttaccaggag
agagggagcctgggacgcctggcaaacgggagcgccaggctgggtggcgaggagcaccgg
tcgcgccttccgccctcccgcagtgcctattccagcagcggtcatgacgccagtcaggac
tgccccttggaggagatgcccctgagtgtagcctctgagttcccgccaacctccccttct
gcccacactccaaaaagagaaatttacctgtga
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