Xiphias gladius (swordfish): 120802966
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Entry
120802966 CDS
T07311
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03440
Homologous recombination
xgl03450
Non-homologous end-joining
xgl04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120802966 (rad50)
03450 Non-homologous end-joining
120802966 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
120802966 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xgl03032
]
120802966 (rad50)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120802966 (rad50)
DNA replication proteins [BR:
xgl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
120802966 (rad50)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
120802966 (rad50)
BRCA1-C complex
120802966 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
120802966 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
ABC_tran
zf-met
AAA_29
AAA_16
AAA_22
AAA_13
Motif
Other DBs
NCBI-GeneID:
120802966
NCBI-ProteinID:
XP_040007110
LinkDB
All DBs
Position
LG17:10459718..10488144
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQIISFVSPLTVLVGPNGAGKTTIIECLKYATAGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGEKVTIQRSMSCTLKAKTYSFKSLEQVITR
KKDGQKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRMTQNQTVKECQVELRYLKQNKEKAQQIRDTVATKEAQLMASKEN
VQQIESQIDPLENQLMNIDTKLGKVMKLDSDIKALESRKKQMEEDNRELEETMEQVFQGS
DEQLQEIYQNHQRTVREKERRLTDGQKELERAGRECQRLNRVKADLLVERGRLQTEADHH
TQNIKNRDTQVRSLSLYLEMEGYDRPPFTTLQLESFNRHISQRLEQEKETVSQVLMDLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNVRAELQRLEGSSTRLQELENE
LAKADRELQSVVQSSSVEELKVEVVDLQREKAELDRAQRQLDQEMEILNTHTTTRTQVEM
LKKDKTEKEDQVRKIKSRHSEDLLSLLGHFPNKRELEDWIYAKCKEISSTRDRLAKLNKD
LASSEQNKSHIAAELRKKEQQLASDEEKFFNVCGSQDLEQDLGKLHEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDDMMALRPVRKSIVQFQEKELPDLRNRLQTVNREIERLKGDVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQQAAKLQGIDLTRTVQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQMLKSAVNETRAEKLQLSSDMQKQQQLEEQCVEFTTEIQS
LTRDIREAKEQLSPLSAALEKLQQEKKELVERKRQRQEEGQEKINAIKEKVKAITTLEGD
ITKYVDEGKDEYKEQKDSELQETNTQLHEAEKQKERISKEMGNIRQDIDTQKVQERWLQD
NLTLRKRMEELKEVMAKCEALMKDMGSMQVFELHQERREAERRLEDLKKKRSIALGRQKG
FEEEILHYRKELREDQYDKADERYKNKMIIMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDMDENSSAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatccttggggtgaggagctttgggattgaggataaa
gacaaacaaatcatctctttcgtctctcctctgactgtgctggtcggacccaatggagca
gggaagacgactattattgagtgccttaagtatgcgacagcaggagaacttccccctgga
tctaaagggggagcctttgttcatgatccaaaggatgcccatgaaacggatgtgcgggca
cagattcgcctcttattcacagatgttaatggagagaaagtgaccatccaacgctccatg
tcatgcactctgaaggcaaagacctactccttcaaaagcttagagcaggtcatcaccaga
aaaaaagacggtcagaaagtgagcttgtcgtctaagtgtggtgaactggaccgggagatg
atttctgccttgggtgtatcgaagcctgtgctgaatcatgtcatcttctgtcaccaagaa
gagtctaactggccacttagtgagggcaaggcactcaaagacaagtttgactctatcttc
gctgcaaccaagtatatcaaagctctggagacgatgcgtcagctgcgtatgacacagaac
cagacagtcaaagagtgtcaggtagagctgcgctacctgaagcagaacaaggagaaggcc
cagcagattagagataccgtggccaccaaggaggctcagctgatggcctctaaagagaat
gtccagcagatagagagccagatagatccacttgagaatcaactgatgaatattgacaca
aaacttgggaaagtgatgaagctggacagcgacatcaaggctttagagagcaggaagaaa
caaatggaggaggacaacagggagctggaggaaacaatggaacaggtgtttcagggttcg
gatgagcagctgcaggaaatttatcagaaccaccaaaggacggtgagggagaaggagcgg
aggctgacagacggccagaaggagctggagagagctggccgggagtgtcagagactgaac
agagtcaaggctgatctcctggtagaacgaggtcgtcttcagacagaggctgaccaccac
acgcaaaacatcaagaaccgtgacactcaggttcgctctttgtcattgtatcttgaaatg
gagggctacgaccgaccgcctttcaccactcttcagcttgagagctttaatcgtcacatt
agtcagagactggagcaggaaaaagagacagtcagccaggttttgatggacctgcaggaa
aaagagcagcagaagcagcagtccattgatgaaatgagggataagaagactggcctggag
agaactgtggagctgaagagagacctgcagggaaagaagcagcaagaactgaggaacgtc
agagcagagctgcagaggctggagggttcgtctactcgacttcaagagcttgaaaatgaa
ctggctaaagcggaccgcgagctgcagagcgtagtgcagagctccagtgtggaggagctg
aaggtcgaggttgtggatctccagagagaaaaggccgaactcgaccgcgcacagagacag
ctcgaccaagagatggagatactcaacacacacaccaccacacgcacacaagtggagatg
ctgaaaaaagacaagacagagaaggaggaccaggtacgtaagatcaagtctcgtcacagc
gaggatctgttgtctttactgggccactttcccaacaagagagagctggaagactggatc
tatgccaagtgtaaggaaatcagcagcaccagggacaggcttgccaaactcaataaggac
ctggcatcaagtgagcagaataaaagccatattgctgctgagctgcgtaagaaggagcag
cagttagccagcgatgaagagaagttcttcaatgtgtgtggcagtcaggatctggagcag
gacctgggcaaattgcatgaagatctggagaagatatccaaacaaagagccatgctagcc
ggagccacagcagtgtacacccagtttatcagccagctgacagaggagagagagccctgc
tgccctgtgtgtcagcggacgttcccctcagagtctgatctgcaggaagttatcagcgac
atgcagtccaaactacgcctggtgccagacaagctgaaaaacactgagcaggacctgaag
aggaaggagaggaagagagatgatatgatggctctcagacctgtcaggaagtccattgta
cagtttcaggaaaaggagttgcctgacttaagaaaccgtctgcagactgtgaacagagaa
atcgagaggctgaagggagacgtggaggagcaggagactttgctcggtaccctgatgtca
gaggaggaaacagccaaggcctgccttcaggacatatctctcatggacagatacctgatg
gaccttaaagaggtggagaggaaaatagctcaacaggcagccaaactccagggaatagac
ctgaccagaaccgtccagcaagtcagtcaggagaaacaagaaactcagcacaagctagac
accacctccagcaagatggagctgaaacgcaagctgatccaggaccagcaggaccagatt
cagatgctgaaaagtgctgtgaatgagacgcgagcagagaagctccagctgagcagtgat
atgcagaaacagcagcagctggaggagcagtgtgttgagttcaccaccgagatacagtcc
ttaacccgggacatcagggaagcaaaggagcagttgtcccctttgtctgctgctctggag
aagctgcagcaggagaagaaggagctggtggagcgcaagaggcaaaggcaggaagaaggg
caggagaagatcaatgccattaaagagaaagtgaaggcgatcaccaccttggaaggagac
atcaccaaatacgttgatgagggcaaagacgaatacaaagagcaaaaagactctgagctt
caagaaaccaacactcagctacatgaggctgagaagcaaaaagagaggatcagcaaggag
atgggaaacatccgtcaggacatagacactcaaaaggtccaggagcgctggttgcaggac
aacctgacattgaggaagcgcatggaggagttgaaggaggtcatggctaaatgcgaggct
ctcatgaaagacatgggcagcatgcaagtttttgagctacaccaagaacgacgtgaagca
gaacgcaggttggaagacttgaagaagaaacgcagtattgcactgggtcgtcagaaaggc
tttgaggaggagatactgcattacagaaaagagctgcgagaagatcagtatgacaaagct
gatgagcgctacaaaaacaagatgatcataatgaggaccacagagctggtcattaaagac
ctggatctctactacaaagctcttgatcaaacaatcatgaaattccacagtatgaagatg
gatgagatcaacaagattatcagagacctatggcgcagcacctacaggggtcaagacatt
gaatatgtggagatcaggtctgatatggatgaaaactcgtctgctggagtgaagcgaagg
gtttacaactacagagtagttatggtgaaaggagacacagctttggatatgagaggacgc
tgcagtgctggtcaaaaggtgttggcatccttgatcatccgtctagccctggcagagacc
ttctgtctgaactgtggaatcctggccctggatgagcccaccaccaacctggacagggag
aatattgagtcattggcacacgccctcgtagaaatcattaagagtcgctctcgtcagcgt
aacttccagctgttgatcatcacccatgatgaggactttgtggagctgctggggcggtcc
agctacattgaacacttctaccgcatccgtaagaatcaagaccagaactccgaaatcaca
aagtgcagcatcacctccctctcatcctatctgcactga
DBGET
integrated database retrieval system
