Xiphias gladius (swordfish): 120803465
Help
Entry
120803465 CDS
T07311
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
xgl
Xiphias gladius (swordfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
Herpes_DNAp_acc
Motif
Other DBs
NCBI-GeneID:
120803465
NCBI-ProteinID:
XP_040007867
LinkDB
All DBs
Position
LG18:complement(3848732..3892077)
Genome browser
AA seq
1583 aa
AA seq
DB search
MSPPLLTSSSSSLWLMLCFLLSVLLLLSPGVHGQGRLKLTVLSEDRLQMKWKEADGPVQG
YKVRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTEKLLAKRRFTMDG
LREEEMIRSGSREQRKKTLPGGSGSGDLDDATEILLGLPTILYPDPTTNAATTTTEPPAT
EPPSQPPDEATEKTAKEKRKRKKEKERNRSKVENKEEQGTTQGKRAEENSRKTPFPTQPV
TGMSPRKPYECTSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLVTPFNIGPDHIQIGLT
QYSGDPRTEWHLNNFTTKDQLLEGVRNFRYKGGNTFTGQALLHVMEENMKAKAGARSDTP
FFLVLLTDGKSQDDAIAAANRLKNSGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDF
PLLSKLVARLVHILCGRIEDRGIAKRIEPAPTADPALSYPSPTDLRFSELGSREVKLHWI
NPAKQVQQYRVVYHSAEGQRPQEVVLAGSESTVLLEGLSSQTLYHVSIFPVYEDNVGLAL
RGTVTTLPLTMPANLEVTPSSYSTLRVSWGAAPGATQYMILYSALNHGEPDDAKEEKLSA
DQTVVELAGLLPATDYSVTLYALYDEDPSDPVTAVAATLPLPPPMSVQFPMVTHSMLRVT
WVPGAVDVPSHRITYSTNHGSDVKQVMVTGLNSVLVQNLSSLSRYLVSVQSHFPQGLSAA
LTSNVTTLKVPSPSDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLRVSGE
SEGAILERVEDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSVTVSEETAVSLVVS
WVPPNAHVLQYRVSYTALTAAETQDSTVLVPGGEKQVVLESLQPDTRYSILVTAEYRNRE
GGSGSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIIIQSVKKKETKEETVDE
SSSSHCFTDLEPETLYRISVHSLIGSAEGAAVSILHPTATAQARIPIHPRMYPIHNEVCP
EVTIRNSIVKGFDMMEAFGLTQRAHSTVEGVAAEPFIFNTLPTYTLYRDVQLTQSTKFIH
PAGFSPEHTISVAFRMLQDTPREPFALWQLTDNDYQPKMGVVLNPTTRHLVYFSLDYRGE
VQERTFDQPQVHRLFYGSFHKVHLSISQVSVSLSVDCQRVGERPARPLGNLPTDGFEMLG
KLVKTRGPNSGSAPFQLQSFEIICNTTWASEDTCCDLPGVRDEESCPAPAYTCTCSSDTP
GAPGSPGPIGKPGPRGEKGEKGEQGQKGEVGPPGKPGFEGGLGLLGSTGPRGMTVQGKVG
PPGARGEKGDPGRPGVQGLPGPPGPKGEEGIPGPQGIRGIEGNIGAPGITGPRGFQGMPG
HPGPIGERGPFGPVGPTGLPGSKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLKLDMF
INEMSRKPAPIGEPVGPPGEPGIPGPKGPPGARGTLGHVGPRGRPGRAGYPGEQGQRGMP
GARGDVGTNVQGPTGLKGFAGPPGESKLGVPGSKGDDGKSGPPGIPGPPGQPGEIGPPGV
CDSSGGCHRVPQQTEDPYYGYQP
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcccctcctcacatcatcatcgtcatctctctggctaatgctgtgtttcctg
ctcagtgtcctcctgctgctgtccccaggggtccatggccaaggtcgtctcaagctgaca
gtcctgtctgaggacagactgcagatgaaatggaaggaggctgatggacccgttcagggc
tacaaggtccgagtgagacccatctcagaggttccacagccagagctgatgctgaccact
acacggggccgtgcaaccgtggcaggactggactccagtcaggaatacgccctccaagtc
cttgtgctcaatgggaccacagagaaacttctcgcaaagagacgattcaccatggacggt
ctgcgggaggaagaaatgatccgcagtggtagtcgggagcagaggaagaagacgttgcca
ggtgggtcagggtcaggagacctggatgatgcaacggaaattctgctgggcctgccgaca
attctgtatccagaccccaccaccaatgctgctactactactacagagcccccagctaca
gaaccaccctctcagccgcctgatgaggccacagagaaaactgccaaagagaagaggaaa
aggaagaaagaaaaagagcggaatcggtctaaggtggagaacaaggaggagcaggggaca
acacagggtaaacgggccgaggagaattcccggaagacgcccttccctacccagccggtt
acaggcatgtctccaaggaaaccatatgagtgcaccagcgatgcagcggcggacatcatg
cttttggtggatggctcctggagcatcggacgcaccaacttcagacgtgtccgagacttc
ttggagggcctggttacacccttcaacattgggccggaccacattcagatcggtctgacc
cagtacagtggtgaccctcgcacagagtggcatctcaacaacttcactactaaagaccag
ctgctggagggagtaaggaattttagatataagggaggaaacacatttacaggccaggcg
ctgctccacgtcatggaggagaacatgaaggccaaggcaggagcgaggtcagacacacca
tttttcctggtcttgttgaccgatggaaaatctcaggatgacgccattgctgcggcgaac
cggctgaagaattcgggcgtcgagatcatcgctgtaggtgtgaagaacgctgatgaagcc
gagttgagacaagtggcatcggagccagtggatctgaacgtctacaatgtcaatgacttc
cctcttctaagtaaactggtggcacgactggtccacatcctgtgtgggaggatagaggac
cgtggcattgcaaagcgaattgagcctgcacccacagcagacccagccctctcctacccc
agtcctactgatctgcgcttctctgaactgggctccagagaagtgaagctccactggatc
aatcctgctaagcaagtccaacagtacagagtggtttatcacagtgcagagggtcagaga
ccacaggaggtcgtattggccggctcagagtcgactgtgctgctggaaggcctctcctct
cagacactgtaccatgtgtccatcttccctgtgtatgaagataatgttggcctggcactc
agaggaactgtcacgacattgcccctcaccatgcctgccaacctggaggtgacaccttcc
tcatacagcacgctgcgagtgagctggggcgcagcacctggtgcgacacagtacatgatc
ctgtactcagctctcaaccatggagaacctgatgacgccaaggaggagaagttaagtgca
gatcagacagtggtggagctggcggggttactgccggcaacagactactctgtcactctg
tatgctctctatgatgaggatcccagtgaccctgtcactgctgttgccgctacattgcct
ctgccaccgccaatgagtgttcagttcccaatggtcacccatagtatgctgagggtgacc
tgggtgcccggagccgtggacgtccccagccacagaatcacctacagcacaaaccatggt
agtgacgtcaagcaggtgatggtaacagggctcaactcggtgctggtgcagaacctgtcc
tctttgtccagatacctggtttcagtccagtctcacttcccacaaggcctgtccgcagca
ctcaccagtaacgtcaccacactgaaggtgccttccccatcagacctcagggtgactaat
ttctcaggcagtgatatcactgtgcgctgggaagctgcagctgatgacgttgtgtcctac
ctcattaaatggatctcccttagtggaggggacctgagacagttgagggtaagtggtgag
agtgaaggggcgatcctggagagggtggaggacgataaggaataccagatctctctgtct
gcactttatggagatggagctcagagtgaagctgtggccatacgctatagcaccttgtct
ggtggaggcccgtccagcgtaacggtctccgaggagactgcggtaagcttggtggtcagc
tgggtacctcccaacgctcatgtcctccagtatcgtgtgtcttacactgcactgactgca
gctgaaacccaggacagcactgtgttggtcccagggggtgaaaagcaggtggtgctagag
tcattacagccagacacacgttacagcatcctggtcaccgccgagtaccgcaacagagaa
ggaggcagcggttcagcccagggcaaaaccaccagtctgcgggtgagcagcgtgagtgtg
gtcaggtcagaccactccagcatctgtgtttcttggagacctgtgtctgctgtcgatgga
tatcgtattatcatccagtctgttaaaaaaaaggaaacaaaggaagaaactgtcgatgag
tccagcagcagtcactgcttcactgatctggaaccagagactctgtatcgcatcagcgtg
cactcactcatcggctcagcagagggcgctgctgtctccattctccatccaacagccaca
gctcaagccagaattcccatccatccccggatgtatcctatccacaacgaagtgtgtcct
gaagtcaccatcagaaacagcatcgttaaagggtttgacatgatggaagcgtttggtctg
actcagagagctcactcgactgtggaaggtgtggcagccgagccgtttatattcaacacc
ctccccacctacacactgtacagagacgtccagctgacacagagcaccaagtttatccac
cctgcaggtttctctccagagcacaccattagcgttgccttccgcatgttgcaggataca
cccagggagcccttcgccctctggcagctcactgacaatgactaccagcccaagatggga
gtggtgctcaacccaacaacaaggcatctggtgtacttcagtctggactacaggggagag
gtgcaggaacggacctttgaccagccgcaggtccacagactgttctatggcagttttcac
aaggtacacttgtctatcagccaggtgagtgtgtccctgtctgtggactgccagcgcgtc
ggcgagagacctgcccgccctctaggcaacctaccgactgatggttttgagatgctggga
aaactggtgaagaccagagggcccaatagtggatctgccccgttccagctacagtccttt
gagatcatctgtaacaccacatgggcttcagaggatacctgctgtgacctgcctggagtg
agagatgaggagagctgtcctgccccggcgtacacctgcacctgttcctctgacacccct
ggagctcctggttcccccggcccaattggaaaaccaggtcctcgtggtgagaaaggcgag
aagggagagcaaggccaaaagggggaggtgggtcctccaggaaagcctggatttgaggga
ggccttggactcctaggcagcacagggccccgaggcatgactgtccagggcaaagtgggt
ccaccaggtgccaggggggagaagggggatcctggtcgaccaggagtccagggtttacca
ggacctccaggtccaaaaggggaagaggggatcccaggcccccagggcattaggggaata
gaaggtaacattggtgcacctgggatcactggacccaggggtttccaaggaatgccggga
cacccagggcccataggggaaaggggccccttcggacctgtgggacctacgggtcttcca
ggtagtaaaggagaacgaggagagaagggggaacctcagtcaatggccatgatctaccaa
cttgtcacacaggcctgtgagcaactagtgcataaggaggtgttgaagcttgacatgttc
attaacgagatgagtcgtaagccagctcctattggggagccagtggggcccccaggggag
ccgggaataccagggcccaaaggcccaccaggagccaggggtaccctggggcatgttggc
ccaaggggtcgacctggcagggctggatatccaggagaacaggggcagagaggtatgcca
ggggcgagaggtgatgtagggaccaatgtccaggggcccacagggctgaaaggctttgca
ggtcctccaggtgagtccaagctgggagtcccaggttccaaaggagatgatggtaagtca
ggaccaccagggatccctggacctcctggacagccaggcgagattggcccaccgggtgtt
tgcgacagcagtggaggctgccacagagttccccagcaaacagaagacccttattatggc
taccagccttga
DBGET
integrated database retrieval system
