Xiphias gladius (swordfish): 120803862 Help Entry 120803862         CDS       T07311                                  Symbol col2a1a Name (RefSeq) collagen, type II, alpha 1a   KO K19719   collagen type II alpha Organism xgl  Xiphias gladius (swordfish) Pathway xgl04510   Focal adhesion xgl04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:xgl00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120803862 (col2a1a)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     120803862 (col2a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:xgl00536]     120803862 (col2a1a) Glycosaminoglycan binding proteins [BR:xgl00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120803862 (col2a1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  120803862 NCBI-ProteinID:  XP_040008776 LinkDB All DBs Position LG18:21407995..21431883 Genome browser AA seq 1487 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG PKGPPGPMGPSGEQGPRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA AQLAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGPAGPLG PRGPPGPSGKAGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG ETGAAGAKGEAGAPGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG PAGAPGFPGSPGSKGEAGPTGARGTEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPQG PPGPTGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG PKGVTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG VMGFPGPKGANGEPGKPGEKGLLGRPGLRGLPGKDGETGSAGPPGPAGPAGERGEQGQPG PSGFQGLPGPSGAPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGTQGLQGPRG LPGTPGTDGPKGAIGPAGAAGPQGPPGLQGMPGERGAGGIPGPKGDRGDNGQKGPEGAPG KDGSRGLTGPIGPPGPAGPNGAKGETGPSGPSGAPGSRGAPGDRGEVGPPGPAGFAGPPG ADGQPGAKGELGEAGQKGEAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG AAGRVGPPGPNGNPGPAGPAGSAGKDGPKGARGDAGPPGRQGDAGLRGPAGQQGEKGEPG EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSAGDRGPPG PVGPPGLTGPAGEPGREGTPGSDGPPGRDGAVGAKGERGNTGPAGAPGAPGAPGAPGPVG PLGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG LPGPPGPAGDSGTAGPAGPSGAKGPPGPAGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK SLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETG ETCVYPSIANVPMKNWWTSKSKDRKHVWFGETMNGGFHFDYAQDGPAANAASIQLTFLRL LSTEASQNLTYHCKNSIAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKK HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4464 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggtggctgcatccaggac ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgtatctgtgtgtgc gacagtggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaat cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt gaaacaattggtgctaagggccagaaaggtgaaccaggagagattgcagatgttgtagga ccaaaaggaccacctggcccaatgggcccctcaggtgagcagggaccacgtggagaagct ggcgctaagggtgacaagggaaatcctggacctcgaggaagagatggtgagcctggcacc cccggaaatcccggcccacctggaccacctggaccaccagggcttggagggaactttgct gctcagttggctggaggttttgatgagaaggccggaggcgctcaaatgggtgtgatgcaa ggaccgatgggtcctatgggtccacgtggtcctcctggacctagtggagctcctgggcca cagggtttccaaggtgcccctggagaggctggagagcctggtccagctggaccactggga cctcgtggaccacctggaccttctggaaaagcaggaagtgatggtgaggctggcaaacct ggcaaggctggtgagcgtggacctgcagggcctcagggcgctcgtggattccctggaact cctggacttcctggaatcaaaggacacagaggtcatcctggtctggatggagccaaggga gagactggtgctgcaggagccaagggtgaggctggtgcccctggtgagaacggtgcccct ggacccatgggcccacgtggtctgcctggtgagaggggacgtcctggagctgctggagct gcaggtgcccgtggaaatgatggcttgcccggtcctgctggtccacctgggcctgttggc cctgctggagctcccggtttcccaggatccccaggatccaagggagaagctggccctact ggtgcccgtggaactgagggccaacagggaccacgtggagaggccggtaccccaggatct cccggacccgccggtgcatcgggtaaccccggtactgatggtattcctggagctaaggga tctgctggagctcctggtattgctggtgctcctggtttccccggcccccgtggcccacct ggaccacagggagctacaggacctctggggccaaagggacagtctggagaccctggtctt cctggattcaaaggtgaagctggacctaagggagagctcggccccgctggtcctcaaggt ccccctggccctactggtgaagaaggaaagagaggcgccagaggagagcctggagctgct ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttccctggtcag gatggtcttgctggtgctaagggggcccctggtgaccgtggtgttcctggtgctgctggt cctaaaggtgttactggagaccctggacgcacaggagagcctggcctcccaggagccaga ggtctcactggtcgtcccggagatgctggtcctcaaggcaaagttggaccctctggtgcc cctggtgaggacggtcgtcccggcccacctggtcctcagggagccagaggacagccagga gtgatgggattccctggaccaaagggagccaatggtgaacctggaaagccaggagagaag ggtcttttgggtcgtcctggactgagaggtctgcctggaaaagatggtgagactggttct gctggacctcctggccctgctggacctgctggagagagaggagagcaaggacagcctgga ccttctggcttccagggtctgcctggaccatctggtgccccaggagaggctggaaaacct ggagaccagggtgttcctggagagggcggagctcctggtgctgttggacctagaggtgaa cgtggtttccctggtgagaggggtggtgctggaactcagggtcttcagggacctcgtgga cttcctggaacacctggaactgatggacctaagggagccattggaccagctggtgctgct ggacctcagggaccccccggtctgcagggcatgcctggagagagaggagctggtggtatc ccaggacctaagggagacagaggtgacaatggacagaagggacctgagggtgctcctgga aaggatggttctagaggtttgactggtcccattggtcctcctggcccagctggacccaac ggtgccaagggcgagactggacctagtggacctagtggtgctcctggttctcgtggcgct cctggtgaccgtggtgaggtcggtcctcctggacctgctggctttgctggacctcctggc gcagatggtcagcctggtgccaagggagagcttggtgaggctggacagaagggagaagct ggttctcctggacctcagggaccatccggggctcctggacctgtgggacctactggtgta tctggacctaaaggagctcgtggtgctcagggagctcctggtgccactggtttccctggt gctgctggtagagttggacctcccggccccaatggtaaccctggccctgctggtcctgct ggttctgctggtaaagatggaccaaagggtgctcgtggtgacgctggccccccaggaaga caaggagatgctgggcttcgtggacctgctggccaacaaggagagaagggagagcctgga gaggatggaccacctggtgctgatgggccttcaggtcctcagggtctggctggatctcgt ggtattgttggtttgcctggtcagcgtggagagagaggcttccctggtctccctggacct tctggagagcctggtaaacagggagcttctggttctgctggtgatcgcggacctcctgga cctgtgggaccccctggactcactggacctgctggagagcctggtagagagggtacccct ggatcagatggaccacctggtagggacggagctgttggagccaagggagagcgaggtaac actggtcctgctggagcccctggagctcccggtgcccctggtgcccccggacctgtcgga ccccttggcaagcagggagacagaggagaggctggtgctcaaggacctgcaggacccgct ggacctgctggcgctagaggaatggctggaccccaaggaccacgtggagacaagggagag gctggtgagactggagagaggggacagaagggtcaccgtggcttcactggtctgcagggt cttcctggacctcctggtcccgctggagattctggaactgctggacctgcaggaccaagc ggtgctaagggaccacctggaccagctggacctgctggcaaagatggatctaacggacaa cctggccctattggaccccctggacctcgtggacgctctggagaaactggtcctgctggt cctcctggtaacgctggaccccctggtcctcctggtcctcctggccccggcatcgacatg tctgccttcgccggtctgggtcagacagagaagtcccctgatcctctcaggtacatgagg gctgatgaggcctccagctccctgaggcagcacgacgttgaggttgattccacactcaag tcccttaacaaccagattgagaacctgcgcagccctgacggctcccagaagaaccctgct cgcacctgcagagacctgaaactgtgccaccctgagtggaagagtggtgactactgggtt gatcccaacattggcagcacagccgatgccatcaaggtcttctgcaacatggagactgga gagacctgcgtctacccgagcatcgccaacgtaccaatgaagaactggtggaccagcaag agcaaggaccgcaaacacgtttggtttggagagaccatgaatggaggattccacttcgac tatgctcaagacggccccgctgccaatgctgccagcatccagctgaccttcttgagactt ctgtccactgaagcatcccagaacctcacttaccactgcaagaacagcattgcctacatg gaccagaccacaggcaacctgaagaaggccttgctgctgcagggctccaacgacgtggag atccgcgcagagggcaacagtcgcttcacatacagcgtgttggaggatggctgcaagaaa catacaggccggtggggcaagactgtctttgagtacaaaacacagaagacctcccgtctg ccaatcgtggacattgctcctatggacatcggaggagcggatcaggagtttggagtggat gtaggcgcagtctgcttcttgtaa

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