KEGG   Xiphias gladius (swordfish): 120803958
Entry
120803958         CDS       T07311                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
xgl  Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:xgl01009]
    120803958 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xgl03036]
    120803958 (kdm5bb)
Enzymes [BR:xgl01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     120803958 (kdm5bb)
Protein phosphatases and associated proteins [BR:xgl01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120803958 (kdm5bb)
Chromosome and associated proteins [BR:xgl03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120803958 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHDvar_NSD PHD-1st_NSD PHD_5
Other DBs
NCBI-GeneID: 120803958
NCBI-ProteinID: XP_040008959
LinkDB
Position
LG18:complement(23626661..23643870)
AA seq 1547 aa
MSQPRPDEFKPPPECPVFEPSWEEFGDPFAFINKIRPIAEKTGICKVRPPPGWQPPFACD
VDRLHFVPRIQRLNELEAQTRVKLNFLDQIAKFWDLQGCALKIPHVERKILDLYKLNKLV
ADEGGFDIVCRDRRWTKIALQMGFAPGKAVGSHLRGHYEKILYPYNLFQSGANLLAPEPA
SKLMHFEADPELEKCVQKPVQLVEITGSMESVDSKEHKLQDLAQRPPALTPDTCLSARRA
KRMKYEAICVKTEAGEPGENRPNLRRRMGSFVAKQEPEKEIPIPVKQEPVESKEPIIDAD
KAKTRYKKIIPQVPPSPVDLVVCLVCGSGGDEDRLLLCDGCDDSYHTFCLIPPLQDVPKG
DWRCPKCVAQECNKPHEAFGFEQAYRDYSLRAFGQMADAFKSDYFNMPVHMVPTELVEKE
FWRLVGAIDEDVTVEYGADIASKEFGSGFPILNGKLKVSPADEKYLKCGWNLNNLAMMNP
SVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQ
LEKVMKKLAPELFESQPDLLHQLVTIMNPNTLMAHGVPIYRTNQCAGEFVITFPRAYHSG
FNQGFNFAEAVNFCTVDWMPLGRQCVDHYRMLHRYNVFSHDEMVCNMASKAETLDVVLAS
AVHKDMVVMIREEQGLREKVKKMGVFQWREAKYDHLQDDERQCAKCRTTCYLSAITCPCS
PGILVCLHHISDLCSCPIADYTLNYRYTLDELFPMLKAVKQRAELYDDWASRVTETLEAK
LEKKKGLPVFRSLLAESESKLFPDNDLLRRLRLVTQDAEKCSSVAQQLLNGKRQTRYRCG
SGKSRSQLTVEELSSFVRQLYNLCCSLPQAPMLKELLNRIEDFQQHSEKVLADEVPSVAE
IQGLLDVSFDFDVELPELPRLRVRLEQARWLEAVQQASAQPATLTLETMRRLIDQGVGLS
PHPSVEKAMARLQELLTVSEHWEDKASSLLKARPPHSIETLTVAAEKASGIPAYLPNCLL
LKDTIRKASEWLQEAEELQASGCVLMVDSLSDMVLRGQAIQVHLEPLDRLESLMVEVQEW
KESAATIFLQKDSTLTLLEVLCPRCEIGNVRSLKRKAKKGKELPKSNKKKMSRLNTLTDV
EKALSETKDSTSAMATLEELRVREMEAFYNLRAANESKLLPTADCMDLKVCVCQKAPMGA
MLQCELCRDAFHSVCVRETSDSCETQPWVCPQCQRSEKPPLNKVLSLLSSLRRIGVRLPE
GDALHHLVERTVNWQHRTQQISQTCNLPELEERPGTPPTLTSWVSGSHDTHNNTQAPCLT
PEWNRTSHAQTVFYTEQRCIPLQGLSQELEELMVEGLLLQVSLREVQSLYHILLDRANSQ
HTSRCMLPPQDESTDCDKHMQFNSQGKNLPLNQDGVNAMRDIMNGSEKKAKRHLEREVLD
AEHRVKDKKHSRKRQKMNKKNLQRRTASTSSSPRSDFSQSDDSDEEMAVCPADRCQLPEG
DEVDWVQCDGSCNQWFHQVCVGVTAEMAEKEDYICVRCTLNDGHMRK
NT seq 4644 nt   +upstreamnt  +downstreamnt
atgagccagcctcggccggacgagttcaagcctcctccggagtgcccggtcttcgagccc
agctgggaagaatttggagatccttttgccttcattaataagatccgtcccatcgccgaa
aaaactggcatttgcaaagtccgcccgcctccgggttggcagcctccgtttgcatgcgat
gtggacagacttcactttgttcctcggatccagaggctcaatgaactggaggcacagacc
agagttaagctcaacttcttggaccagattgccaaattttgggatttgcagggatgtgcc
ctgaagattcctcatgtggagaggaagattttggatctatataagttaaataagctggta
gcagatgagggtggatttgacattgtctgtagggacaggcgatggacaaagattgcacta
caaatgggctttgcccctggcaaggctgttggctcacacctgcgagggcattatgagaaa
atcctctatccctacaatctctttcagagtggcgcaaacctgctggcaccagagccagct
tccaaactgatgcattttgaggctgatcctgaacttgaaaagtgtgttcagaagccagtc
cagctggtggagattacaggaagcatggagagtgtggacagcaaggagcacaagctgcag
gacctggctcagaggccacctgccctgacgcctgacacttgtctcagtgctcgcagagcc
aagcgtatgaagtatgaggccatctgtgtgaagactgaagcaggtgagcctggcgagaac
aggcccaacctgaggcggaggatgggttcttttgttgccaaacaagagccagaaaaagag
attcctattccagtgaaacaggaaccagttgaaagtaaagaaccaataattgatgctgac
aaagcaaagacacggtacaagaaaatcatccctcaagttcctccaagtccagtggatctg
gttgtgtgtctggtgtgtggcagtgggggagatgaagaccgtctgttgctgtgtgacggc
tgtgacgacagctatcacactttctgcctgatccctcctttacaagatgtccccaaagga
gactggaggtgccccaagtgtgtggctcaggaatgcaacaagcctcatgaggcattcggc
tttgaacaagcatacagagactattccctgcgtgcatttgggcaaatggctgatgcattc
aaatctgattacttcaacatgccagttcatatggtacctacagagctggtggagaaagag
ttctggcgtttggttggagccatcgatgaggatgttactgtagaatatggagcagatatt
gcctcaaaggagtttgggagtggattccccattctgaatggaaaattaaaggtttcccca
gctgatgagaaatacctcaagtgtggctggaacctcaacaacctggcgatgatgaaccct
tctgtactgactcatgtgacagctgacatctgtgggatgacgctgccatggctttatgtt
ggcatgtgcttctcctccttttgctggcacattgaggatcactggagctactccatcaac
tacctgcattggggggaacccaaaacttggtacggagctcctggttttgcggcagaacag
ctggagaaggtgatgaagaaactggcccctgagctgtttgagtctcagccagacctgttg
caccagctggtcaccatcatgaaccccaacaccctgatggcccacggagtcccaatttac
agaacaaaccagtgtgctggtgagtttgtcatcacgtttcctagagcctaccacagtggc
ttcaatcagggcttcaactttgctgaggcggtcaacttctgcaccgtggactggatgcct
cttggcaggcagtgtgttgaccactatcgtatgctgcatcgttacaatgtgttctcccat
gatgagatggtgtgcaacatggcctcgaaagcagaaacactcgatgtggtcctggcctca
gctgtccacaaggacatggtcgtcatgatccgagaggagcagggactgagagagaaagtg
aagaaaatgggggtgttccaatggagggaggcaaaatatgatcacctccaggatgacgag
cggcagtgtgccaagtgcaggaccacctgctacctgtctgccatcacctgtccctgtagc
ccaggaatactggtctgtctgcaccacatcagcgacctctgctcctgccccatcgccgat
tacacactgaattatagatacacactggacgagctgttccccatgctgaaagctgtgaag
cagcgagctgagctgtatgatgattgggcctcccgtgtgacagagactctagaggctaaa
ctggagaagaaaaaaggccttccagtgtttcgctccctccttgctgaatcagagtccaag
ctgttccccgacaacgacctgctgcgtcggctgcgtctggtcacacaagatgcagagaag
tgctcctccgtggcgcagcagctgttgaacggcaagaggcagaccaggtatcgttgtggt
agtgggaaatcacgaagccagctgactgtggaggagctgagttcgtttgtgaggcagctg
tataacctctgctgcagtctccctcaggcccccatgttgaaggaactcttgaatcgcata
gaagacttccagcagcacagtgagaaggtgctggcagatgaagttcccagtgttgctgag
atccagggcctgttagacgtcagctttgacttcgacgtggagctgcctgagctgcctcgc
ctgagagtgaggctggagcaggcacgctggctggaagcagtgcagcaggccagcgcccag
cctgccaccctgactctggagaccatgaggaggctcatcgaccagggcgtcggcttgtca
cctcatccatccgtagagaaagccatggcacgccttcaggagctgctcactgtgtctgag
cactgggaggacaaagcgagcagtctccttaaagccagaccaccacactccatagagact
cttactgttgctgctgagaaggcatctggtatccctgcttacctccccaactgtctgctc
ttgaaagacaccatcagaaaggccagtgaatggcttcaagaagctgaggagcttcaggca
agcggttgcgtactgatggtggacagcctctctgacatggtgctacgaggacaagccatt
caagtccacctggaaccgttggacaggctggagtctttaatggttgaagtgcaggaatgg
aaagaatctgcagctacaattttccttcaaaaagattcaactcttaccttactggaggtt
ctgtgtccaagatgtgaaattggaaatgtacgttctctaaagaggaaggccaagaaaggg
aaagaattgcctaaaagcaacaaaaagaaaatgtcaaggctcaacactctcactgatgtg
gaaaaagcactttcagagaccaaggattctacctctgcgatggcaactctggaggagctg
cgggtgagggagatggaggctttctataatctcagggcagcaaatgagtcgaagctcctt
cccacagcagactgcatggaccttaaggtgtgtgtctgtcagaaggctcccatgggtgcg
atgctgcagtgtgaactctgcagggatgccttccacagtgtgtgtgtcagagagacatca
gactcctgcgaaacacagccgtgggtctgtccgcagtgccagcgatcagaaaagccccca
ttgaacaaagtcctctccctgctatcatctctgcggcgcataggggtgcgcctgccggag
ggtgacgctctgcaccatctggttgagaggacagttaactggcagcaccgaacacaacag
atttcacagacatgtaacctaccagagctggaagagagaccagggactcctcccacccta
accagctgggtatcaggcagccacgacactcacaacaacactcaggctccttgcttgact
ccagagtggaataggacaagccatgctcagactgtcttctataccgagcagagatgcata
ccgctgcagggcctgagtcaggagctggaagagctgatggtggagggactcctgctgcag
gtgtctctgcgagaggtccagagcctctaccacattttattggacagagccaacagccag
cacacaagcagatgcatgctgccaccacaggacgagtccacagactgtgacaaacacatg
cagtttaactctcagggaaaaaatctgccactgaaccaggatggtgtaaatgccatgagg
gacattatgaatggctcagaaaagaaagcaaagcggcatctggagagggaagttttagat
gcagagcacagggtgaaggacaaaaaacactctcgcaaaagacaaaagatgaataagaag
aacctgcagcgcagaacagcctcgacctcgtcctcgccgcgctctgatttctcccagtct
gacgactctgatgaggaaatggctgtgtgtccagcagataggtgtcagctgccagaggga
gatgaggtggattgggtccagtgtgacggaagctgtaaccagtggtttcaccaagtctgt
gtcggtgttacggctgagatggcggagaaggaggactacatttgtgtcaggtgtacactg
aatgacggacacatgagaaaatga

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