Xiphias gladius (swordfish): 120804224
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Entry
120804224 CDS
T07311
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120804224 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120804224 (prpf6)
Spliceosome [BR:
xgl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120804224 (prpf6)
Complex C
U5 SnRNP specific factors
120804224 (prpf6)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
TPR_16
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_1
FAT
TPR_CcmH_CycH
ARM_TT21_N
ARM_TT21_C
T7SS_EccA1_N
ARM_TT21_5th
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
120804224
NCBI-ProteinID:
XP_040009469
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All DBs
Position
LG18:complement(18173393..18185743)
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AA seq
969 aa
AA seq
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MASAAAKQAPKITPKTSAGGTGAAGVSGGPPIMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTTVDPL
QGLGGLNTPYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDVRAKKRV
LRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANGNTQMVDKIIDRAITSLHANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIEEEDRKHTWMEDAESCVAHGALECARAIYAHALQVFPS
KKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILA
LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQELCTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPHSVPLWLLLSHL
EERVGQLTRARAILEKARLKNPQSPELWLESVRLEFRAGLKNIANTLMAKALQECPNSGI
LWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLGVAKLFWSERKITKAREWFLRTVKIEP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENVEPRHGELWCAESKHVLNWQKKTGEILAL
VASKIKNTF
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgctgctgctaaacaagcgcctaaaattacccccaaaacatccgcgggaggc
accggggcagcgggggttagcggtgggcccccaataatgcccctcgcctcgccgctcatg
gggaaaaagaagaagccgttcctggggatgcccgctccgctgggctacgtccccggtctc
ggcagaggtgcaactggtttcaccactcgatctgatattggtcctgctcgagatgccaat
gatccagtggatgaccgacatgcacccccagggaagaggacggttggggaccaaatgaag
aagaaccaggacgatgatgatgaagatctgaacgacaccaactatgatgagtttaatgga
tatgcaggtagcttgttttccagcgggccctatgagaaagacgatgaagaagcagatgct
atatatgcagcactggacaagaggatggatgaaagacgcaaagaaagaagggagctgaga
gaaaaggaagaaattgagaaatatcgtatggagcgacccaaaatccagcagcagttttca
gatcttaagaggaagttggcagaggtgtcagaggaggagtggctgagcatccctgaagtg
ggagatgcaaggaacaagcgccaaaggaatccacgctatgaaaaactcacgcctgtccct
gacagcttcttctccaaacacctgcagaccggagagaaccacaccaccgtggaccctctg
caagggctgggaggtctgaacaccccttacccaggaagtatgacacctggtctgatgacg
ccaggaacaggagagctggacatgaggaaaatcggtcaggccaggaacacactcatggat
atgaggctcagtcaggtatctgactcagtgagcggacagacagtggtggatcctaagggt
tacctgacagatctcaactctatgatccccacacatggaggagacatcagtgatatcaag
aaggctcgtctgctgctgaaatcagtgagggagaccaatccccatcacccacctgcctgg
attgcctctgccaggctggaggaggtaactggcaaactgcaggtggcaaggaacctgatc
atgaaaggcaccgagatgtgtcctaagagcgaggatgtatggctggaggcagctcgactc
cagcctggggacacagccaaggccgtggtagcccaggctgtccgccacctgccgcagtcc
gtccgtatctacatcagagctgcagagctggagacagatgtcagggccaagaaacgagtc
ctcaggaaggccctggagaatgtgtccaagtcagttcgactgtggaagacagctgttgag
ctggaagagccagaggatgccaggatcatgcttagccgagctgtggagtgttgccctact
agtgtcgagctgtggctggcactggcccggctagaaacgtatgagaatgctcgtcgtgtc
ttgaacaaagctcgagagaacattcccactgatcgtcacatctggatcactgctgccaag
ttggaggaggccaatggcaacactcagatggtggacaagatcattgacagagccatcact
tcactacatgccaacggtgtggagatcaacagagagcagtggatacaggatgcagaggag
tgtgacaaagccggcagtgtggctacctgccaggctgtgataagggcggtcatagggatt
ggcatcgaggaggaggaccgtaaacacacctggatggaggatgcagagagttgtgtggcc
catggagcgctggagtgtgcccgggccatctatgcccacgctctgcaggtgtttcccagt
aaaaaaagtgtctggcttagagctgcatactttgagaagaaccatggaaccagggaatct
ttggaggccctgctccagagggctgtggctcactgccccaaggcagaggtcctgtggctg
atgggagccaagtccaagtggctggctgaggatgtgcctgcagccagaagtatcctcgct
ctggccttccaggctaacccaaacagtgaagagatctggcttgctgctgtgaaactggag
tctgagaataatgagtatgaaagagcccgtcgactgctggccaaggcccgcagcagtgcc
ccaacagccagggtatttatgaagtcagtgaagttggagtgggtgttgggaaacatagaa
gctgcccaggagttgtgcaccgaggccctgaaacactatgaggacttcccaaaactttgg
atgatgagaggccagatagaggagcagtgtgaaaacatggacaaggcaagagaggcctac
aaccaagggttgaaaaagtgtccccactcggtgcccctgtggttgttgctgtctcatctt
gaagagagagtggggcagctgactagagccagagcaatcctggagaaggcacgactcaag
aacccccagagccctgagctatggttggagtcagtcagactggagttcagggctggactg
aagaacattgccaacacactgatggccaaagccctgcaggagtgccccaattcaggtatc
ctgtgggctgaggctgtgtttttggaggccaggccccagaggaagactaagagtgtggat
gctttgaagaagtgtgaacatgacccccacgtcttgctcggtgtcgccaagttgttttgg
agtgagcgtaagatcaccaaagccagagagtggttcctcaggacggtaaagattgagcca
gacctaggagatgcttgggctctcttctacaagtttgagctgcaacatggcacagaggaa
cagcaggaagaggtgcgaaagcgctgtgagaatgtggagccccgccatggagagctgtgg
tgtgccgagtccaaacatgtcctgaactggcagaagaagacaggagagatcttagcactg
gtagccagcaagatcaagaacacattctga
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