KEGG   Xiphias gladius (swordfish): 120804224
Entry
120804224         CDS       T07311                                 
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120804224 (prpf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xgl03041]
    120804224 (prpf6)
Spliceosome [BR:xgl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    120804224 (prpf6)
 Complex C
   U5 SnRNP specific factors
    120804224 (prpf6)
SSDB
Motif
Pfam: PRP1_N TPR_14 TPR_19 HAT_PRP39_N Suf TPR_16 HAT_Syf1_CNRKL1_C HAT_PRP39_C HAT_Syf1_CNRKL1_N TPR_2 TPR_17 TPR_8 TPR_1 FAT TPR_CcmH_CycH ARM_TT21_N ARM_TT21_C T7SS_EccA1_N ARM_TT21_5th Mt_ATP-synt_B
Other DBs
NCBI-GeneID: 120804224
NCBI-ProteinID: XP_040009469
LinkDB
Position
LG18:complement(18173393..18185743)
AA seq 969 aa
MASAAAKQAPKITPKTSAGGTGAAGVSGGPPIMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTTVDPL
QGLGGLNTPYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDVRAKKRV
LRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANGNTQMVDKIIDRAITSLHANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIEEEDRKHTWMEDAESCVAHGALECARAIYAHALQVFPS
KKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILA
LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQELCTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPHSVPLWLLLSHL
EERVGQLTRARAILEKARLKNPQSPELWLESVRLEFRAGLKNIANTLMAKALQECPNSGI
LWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLGVAKLFWSERKITKAREWFLRTVKIEP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENVEPRHGELWCAESKHVLNWQKKTGEILAL
VASKIKNTF
NT seq 2910 nt   +upstreamnt  +downstreamnt
atggcaagcgctgctgctaaacaagcgcctaaaattacccccaaaacatccgcgggaggc
accggggcagcgggggttagcggtgggcccccaataatgcccctcgcctcgccgctcatg
gggaaaaagaagaagccgttcctggggatgcccgctccgctgggctacgtccccggtctc
ggcagaggtgcaactggtttcaccactcgatctgatattggtcctgctcgagatgccaat
gatccagtggatgaccgacatgcacccccagggaagaggacggttggggaccaaatgaag
aagaaccaggacgatgatgatgaagatctgaacgacaccaactatgatgagtttaatgga
tatgcaggtagcttgttttccagcgggccctatgagaaagacgatgaagaagcagatgct
atatatgcagcactggacaagaggatggatgaaagacgcaaagaaagaagggagctgaga
gaaaaggaagaaattgagaaatatcgtatggagcgacccaaaatccagcagcagttttca
gatcttaagaggaagttggcagaggtgtcagaggaggagtggctgagcatccctgaagtg
ggagatgcaaggaacaagcgccaaaggaatccacgctatgaaaaactcacgcctgtccct
gacagcttcttctccaaacacctgcagaccggagagaaccacaccaccgtggaccctctg
caagggctgggaggtctgaacaccccttacccaggaagtatgacacctggtctgatgacg
ccaggaacaggagagctggacatgaggaaaatcggtcaggccaggaacacactcatggat
atgaggctcagtcaggtatctgactcagtgagcggacagacagtggtggatcctaagggt
tacctgacagatctcaactctatgatccccacacatggaggagacatcagtgatatcaag
aaggctcgtctgctgctgaaatcagtgagggagaccaatccccatcacccacctgcctgg
attgcctctgccaggctggaggaggtaactggcaaactgcaggtggcaaggaacctgatc
atgaaaggcaccgagatgtgtcctaagagcgaggatgtatggctggaggcagctcgactc
cagcctggggacacagccaaggccgtggtagcccaggctgtccgccacctgccgcagtcc
gtccgtatctacatcagagctgcagagctggagacagatgtcagggccaagaaacgagtc
ctcaggaaggccctggagaatgtgtccaagtcagttcgactgtggaagacagctgttgag
ctggaagagccagaggatgccaggatcatgcttagccgagctgtggagtgttgccctact
agtgtcgagctgtggctggcactggcccggctagaaacgtatgagaatgctcgtcgtgtc
ttgaacaaagctcgagagaacattcccactgatcgtcacatctggatcactgctgccaag
ttggaggaggccaatggcaacactcagatggtggacaagatcattgacagagccatcact
tcactacatgccaacggtgtggagatcaacagagagcagtggatacaggatgcagaggag
tgtgacaaagccggcagtgtggctacctgccaggctgtgataagggcggtcatagggatt
ggcatcgaggaggaggaccgtaaacacacctggatggaggatgcagagagttgtgtggcc
catggagcgctggagtgtgcccgggccatctatgcccacgctctgcaggtgtttcccagt
aaaaaaagtgtctggcttagagctgcatactttgagaagaaccatggaaccagggaatct
ttggaggccctgctccagagggctgtggctcactgccccaaggcagaggtcctgtggctg
atgggagccaagtccaagtggctggctgaggatgtgcctgcagccagaagtatcctcgct
ctggccttccaggctaacccaaacagtgaagagatctggcttgctgctgtgaaactggag
tctgagaataatgagtatgaaagagcccgtcgactgctggccaaggcccgcagcagtgcc
ccaacagccagggtatttatgaagtcagtgaagttggagtgggtgttgggaaacatagaa
gctgcccaggagttgtgcaccgaggccctgaaacactatgaggacttcccaaaactttgg
atgatgagaggccagatagaggagcagtgtgaaaacatggacaaggcaagagaggcctac
aaccaagggttgaaaaagtgtccccactcggtgcccctgtggttgttgctgtctcatctt
gaagagagagtggggcagctgactagagccagagcaatcctggagaaggcacgactcaag
aacccccagagccctgagctatggttggagtcagtcagactggagttcagggctggactg
aagaacattgccaacacactgatggccaaagccctgcaggagtgccccaattcaggtatc
ctgtgggctgaggctgtgtttttggaggccaggccccagaggaagactaagagtgtggat
gctttgaagaagtgtgaacatgacccccacgtcttgctcggtgtcgccaagttgttttgg
agtgagcgtaagatcaccaaagccagagagtggttcctcaggacggtaaagattgagcca
gacctaggagatgcttgggctctcttctacaagtttgagctgcaacatggcacagaggaa
cagcaggaagaggtgcgaaagcgctgtgagaatgtggagccccgccatggagagctgtgg
tgtgccgagtccaaacatgtcctgaactggcagaagaagacaggagagatcttagcactg
gtagccagcaagatcaagaacacattctga

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