Xiphias gladius (swordfish): 120804858
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Entry
120804858 CDS
T07311
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120804858 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xgl04990
]
120804858 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
xgl04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
120804858 (pdlim5a)
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GFIT
Motif
Pfam:
LIM
PDZ
PDZ_6
DUF4749
PDZ_2
Motif
Other DBs
NCBI-GeneID:
120804858
NCBI-ProteinID:
XP_040010479
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Position
LG19:13826472..13888564
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AA seq
922 aa
AA seq
DB search
MSSNYSVTLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKAAIAVGDVVLSIDGIATE
SMNHLEAQNKIKSCTDNLSLTLQKASSVAKPPPVAPKTAAPPPVTNGPQSILKKPNPPRV
PRRHIVDTDIHFYHVPTHADASRKRIMEDTEDWRPRTGTTQSRSFKILAQITGTEHVQDE
EADKSKKTNFLSSLTLSSSSCLTDSETNSGKVSERSPAHQSSDQVGVPLTMFSGLNDAED
PLTSAHTDQQQPRVAGSSADRQWPEKDTVIPHDVHISNPESLLKTQNQENNISSTTHLHV
VSTPMSYSNNFDMFCQIHPTHLSNGNYPLAPVLVPLTYNGSALIQMSSSHTRHDICTDAQ
KSNDTSLDAVFLQANTPHSLLGPSPVCTQTPASCLPILSVFPAQRVGVYSPCGSSSVPAQ
NQALGASSDPVPVHRPSTSDFTLTAPPSIQLLTAERSSLGTPLEGSKDLGKFESINCLTG
HDDDNHKLNNPAAESLRAAQTLFHLSPRHSSLVQVSTHLSHISARHHVLSTKPVRRELLT
SPLNFLPRAAPCPPPLTPSAPEQPTRQPYTERHSPVQARTTYQNNPRPPEKAVSQSLLDA
LLITPVFQAPPLCLRKKKKHRKVSELHLPKNKRVSWHQSVTEEGDPLYSSPVNAVYVFSE
ESEEPELNSHESAVVKTMVKGPAATKGHRPHSALITPSFGMKGNGSASVPRGPVPIRPVP
QPHPKDEDTLVQMAEHIPAGTRTPMCAHCNLVIRGPFLVAMGKSWHKEEFNCAHCHTSLA
EIGFVEEQGCVYCEHCYEEFFAPTCSRCQAKILGEVINALKQTWHVYCFLCACCQQPIRN
NTFHLEDGEPYCEQDFYSLFGTGCHGCEFPIEAGDKFLEALGYTWHDTCFVCAVCCTTLE
GQTFFSKKDKPLCKKHAQTLKI
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtcactctcttaggccctgccccctggggcttcaggctgcaa
ggagggaaggacttcaacatgcccctcaccatctccaggctcacggatggtgggaaggca
gctaaagctgctattgctgttggagacgtggttttgtccatagacggcatcgccacagag
agcatgaaccacctggaggcccagaacaagatcaagagctgcactgacaacctcagcctc
accctgcagaaggcctccagtgttgccaaacctccccctgtggcaccaaagactgcagca
cctcctccagtcacaaatggacctcaaagtattttgaagaaacccaatccaccaagagtt
cccaggagacacattgtggacacagacatccatttttaccatgtgcccactcatgctgat
gccagcaggaagcgcataatggaggacacagaggactggcgcccgcgcactggcaccacc
cagtccagatccttcaagattctggctcagatcactggcaccgagcatgttcaagatgag
gaagctgacaaatccaagaaaacaaacttccttagctccctcacactttcctcttctagt
tgtctcactgactctgagacaaacagtgggaaggtcagtgagagatctccagcacatcaa
tcttctgaccaagtaggtgttccactcacaatgttcagtggcctgaacgatgcagaggac
cccctcacatctgctcacactgaccaacagcagccacgggtggcaggctcatcagccgat
cggcagtggccagagaaggacactgtaatcccacatgatgtccacatttccaatcctgag
agcctcttaaaaacccaaaatcaagagaacaacatatcatctacaacacaccttcatgta
gttagcaccccaatgtcgtattcaaataattttgacatgttttgtcaaatacacccaact
catttgtctaacgggaactatccattagctccagtgcttgtacctttaacatataatggc
tcagctctaatccaaatgtcatcatctcacacccgtcatgacatctgtacagatgcacaa
aagtcaaatgacacttctcttgatgctgtctttttgcaagccaacacgccccattcttta
cttggaccgagtcctgtttgtacccagactccagcatcgtgtttgcctattcttagtgta
tttcctgcccagagagtaggagtatactccccatgtggtagcagctctgtaccagctcaa
aaccaagcactaggggcctcctctgatccagtccctgtccatagaccatctacctcagac
tttactcttacagctccaccaagcattcaactactcactgctgaaagaagttccttgggg
acaccactagagggcagcaaagatttgggaaagtttgagtccattaactgtttgactggc
catgatgatgacaaccataaattaaataatcctgctgctgagtctttgagggcagcacaa
actctgtttcacctttcacctcgacacagttccctagtccaagtcagcactcatctatct
catatatcagctcgtcatcatgtactctcaaccaaaccagtcaggagagaactcctgaca
agtcctctaaacttcttgcccagagcagccccctgcccccctcccctcacccccagtgcc
cctgaacagcccacacgacagccatacactgagcgccatagtccagtgcaggcaagaaca
acttatcagaacaatcctaggcctcctgagaaggcagtgtctcagtccttattggacgcc
ctgctcatcactccagtttttcaagctccaccactatgcttgaggaaaaagaagaagcat
cgtaaagtcagtgagctgcacctgcccaagaacaagagggtgtcttggcatcaatctgtc
acagaagagggagaccctctctactcttcccccgtcaatgctgtctatgtctttagtgag
gagagtgaggagcctgaactcaacagccatgagtctgccgttgtgaagaccatggtcaaa
ggacctgctgcaaccaagggtcaccgtccacatagtgctttgatcactccgtcctttggt
atgaagggtaatggcagtgccagtgtcccaaggggtcctgtcccaatccgacctgtccct
cagccccaccctaaagatgaggacaccctcgtccagatggcagaacacatccctgccggg
actcgtacacccatgtgtgcccactgcaacctggtcatcagagggccctttttagtagca
atgggtaaatcatggcataaggaggaatttaactgcgcccactgccatacatccctggca
gagataggctttgtggaggaacagggatgcgtctactgtgaacactgctatgaagagttc
ttcgctccaacatgcagccgctgccaggccaagatactgggggaggtgataaatgccctc
aaacagacgtggcatgtgtattgctttctgtgcgcttgctgtcagcagccaatcagaaac
aacaccttccatctggaggacggagaaccatactgtgaacaagacttctacagtttgttt
gggactggctgccatggctgcgagttccccatcgaggctggagacaagttcctggaggcc
cttggttacacctggcatgacacctgcttcgtttgtgctgtgtgctgtaccacgctggaa
ggccagaccttcttctccaagaaagacaaacctctttgcaagaaacatgctcagacactg
aagatatga
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