KEGG   Xiphias gladius (swordfish): 120805144
Entry
120805144         CDS       T07311                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl03030  DNA replication
xgl03410  Base excision repair
xgl03420  Nucleotide excision repair
xgl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120805144 (rfc5)
   03410 Base excision repair
    120805144 (rfc5)
   03420 Nucleotide excision repair
    120805144 (rfc5)
   03430 Mismatch repair
    120805144 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xgl03032]
    120805144 (rfc5)
   03036 Chromosome and associated proteins [BR:xgl03036]
    120805144 (rfc5)
   03400 DNA repair and recombination proteins [BR:xgl03400]
    120805144 (rfc5)
DNA replication proteins [BR:xgl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120805144 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    120805144 (rfc5)
Chromosome and associated proteins [BR:xgl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120805144 (rfc5)
DNA repair and recombination proteins [BR:xgl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120805144 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    120805144 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_lid_RFC1 AAA_22 RuvB_N AAA_14 DEAD AAA_24 ResIII AAA_assoc_2 AAA_16 DUF815 PhoH AAA_7 nSTAND_NTPase5 AAA_5 AAA_30 ATPase_2 AAA_19 TIP49 DNAX_ATPase_lid nSTAND3 AAA_2 Thioredoxin_6 DUF4119 Glyco_hydro_57
Other DBs
NCBI-GeneID: 120805144
NCBI-ProteinID: XP_040010996
LinkDB
Position
LG19
AA seq 335 aa
MASTSKAPVQTRNLPWVEKYRPQRLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVVQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDAVYTCTGHPLRSD
IANILEWSLNKDFTTAYKQILQLKTLKGLALHDILTEVHLLIHKVDFPPAIRIGLLIKLA
DIEHRLTSGTDEKIQLSSMVAAFQAVRDLVVSEAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcttctactagtaaagcgccggtacagaccagaaatttaccatgggtggaaaaatac
agaccacagagacttgatgatctgatctcacacaaagatattctaagcaccatccaaagg
tttatcagcgaggacaagcttccccatctcttgttctacggcccccctggaacaggcaaa
acctccaccatcctcgcctgtgccaggcagctgtacaaggacaaagagttcaactccatg
gtgctggagctaaatgcatcagatgacagaggtattgatgttgtacgaggtcccatcctg
agttttgccagcacccggactatctttaagaagggcttcaagttggtgatactggacgag
gccgatgccatgacccaggacgcccagaatgcattgcgacgagtgattgagaagttcacg
gaaaacactcgattctgtctgatctgcaactacctgtccaagatcatcccggccctgcag
tctcgctgcaccaggtttcgcttcggcccgctgtccccggaccagatgatcccccgactg
gagcatgtagtccagcaggagagtattgacgtaactccagatggaatgaaggccattgtg
accctatcatctggtgatatgagaagatcactcaacatactgcagagcaccagcatggct
tatgggaaagtcacagaggacgcagtttacacctgcacaggtcaccccctccgctcagat
atagccaacatcctcgagtggtctctcaacaaagacttcaccacagcatacaagcaaatc
cttcagctgaagactttgaaaggtttggccctgcatgacatcctcacggaggttcatttg
ctcatacacaaagtggactttcctccagctattcggattggtctgctcatcaagttggcc
gacatagaacaccggctcacctcaggaaccgatgagaagatccagctgagctccatggtg
gcagctttccaggcagtgagagatctcgtggtcagtgaggcctcctag

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