Xiphias gladius (swordfish): 120805144
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Entry
120805144 CDS
T07311
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03030
DNA replication
xgl03410
Base excision repair
xgl03420
Nucleotide excision repair
xgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120805144 (rfc5)
03410 Base excision repair
120805144 (rfc5)
03420 Nucleotide excision repair
120805144 (rfc5)
03430 Mismatch repair
120805144 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xgl03032
]
120805144 (rfc5)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120805144 (rfc5)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120805144 (rfc5)
DNA replication proteins [BR:
xgl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120805144 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
120805144 (rfc5)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
120805144 (rfc5)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120805144 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
120805144 (rfc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_lid_RFC1
AAA_22
RuvB_N
AAA_14
DEAD
AAA_24
ResIII
AAA_assoc_2
AAA_16
DUF815
PhoH
AAA_7
nSTAND_NTPase5
AAA_5
AAA_30
ATPase_2
AAA_19
TIP49
DNAX_ATPase_lid
nSTAND3
AAA_2
Thioredoxin_6
DUF4119
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
120805144
NCBI-ProteinID:
XP_040010996
LinkDB
All DBs
Position
LG19
Genome browser
AA seq
335 aa
AA seq
DB search
MASTSKAPVQTRNLPWVEKYRPQRLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVVQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDAVYTCTGHPLRSD
IANILEWSLNKDFTTAYKQILQLKTLKGLALHDILTEVHLLIHKVDFPPAIRIGLLIKLA
DIEHRLTSGTDEKIQLSSMVAAFQAVRDLVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcttctactagtaaagcgccggtacagaccagaaatttaccatgggtggaaaaatac
agaccacagagacttgatgatctgatctcacacaaagatattctaagcaccatccaaagg
tttatcagcgaggacaagcttccccatctcttgttctacggcccccctggaacaggcaaa
acctccaccatcctcgcctgtgccaggcagctgtacaaggacaaagagttcaactccatg
gtgctggagctaaatgcatcagatgacagaggtattgatgttgtacgaggtcccatcctg
agttttgccagcacccggactatctttaagaagggcttcaagttggtgatactggacgag
gccgatgccatgacccaggacgcccagaatgcattgcgacgagtgattgagaagttcacg
gaaaacactcgattctgtctgatctgcaactacctgtccaagatcatcccggccctgcag
tctcgctgcaccaggtttcgcttcggcccgctgtccccggaccagatgatcccccgactg
gagcatgtagtccagcaggagagtattgacgtaactccagatggaatgaaggccattgtg
accctatcatctggtgatatgagaagatcactcaacatactgcagagcaccagcatggct
tatgggaaagtcacagaggacgcagtttacacctgcacaggtcaccccctccgctcagat
atagccaacatcctcgagtggtctctcaacaaagacttcaccacagcatacaagcaaatc
cttcagctgaagactttgaaaggtttggccctgcatgacatcctcacggaggttcatttg
ctcatacacaaagtggactttcctccagctattcggattggtctgctcatcaagttggcc
gacatagaacaccggctcacctcaggaaccgatgagaagatccagctgagctccatggtg
gcagctttccaggcagtgagagatctcgtggtcagtgaggcctcctag
DBGET
integrated database retrieval system