Xiphias gladius (swordfish): 120805187
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Entry
120805187 CDS
T07311
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03420
Nucleotide excision repair
xgl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120805187 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
120805187 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xgl04121
]
120805187 (ercc8)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120805187 (ercc8)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120805187 (ercc8)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
120805187 (ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
NBCH_WD40
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
WD_LRWD1
Beta-prop_WDR75_2nd
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
120805187
NCBI-ProteinID:
XP_040011087
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Position
LG19:12023999..12039669
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AA seq
401 aa
AA seq
DB search
MLGFLTARQAGLDDPLRLQRSESTRRVLSLKLNPDRDVERIHGNGINTIDIEAIESRYML
SGGADGVIVIYDLENYSGKPQYTCKAVCTVGRSSRYVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEGNVYSHHLSPIARKHSLIAVGTKNPKIQLCDLKSGSRIH
VLQGHRAEVLSVRWSPRYEHILATASADSKVKVWDVRRASGSLFTLDQHNGDKSKASSEA
VNTAHNGRVNGLCFTGDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKRLQFTV
SRGCSPEFVFVPCGSSIAVYALHTGELVTMLRGHYNNVDCCEFHPDFQELYSGGKDCNIL
AWVPVLRASDVEEESNCTNKGAAGQSSVNPAFQDTWSSDED
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgttggggtttctgacagcaaggcaggctggactggatgaccctctgcgactgcaacgt
tcagagtcaacgagaagggtcctcagtctgaagttgaatcctgacagagatgtggagcga
atccatggaaatggcatcaacaccattgacattgaagcaattgagagcagatacatgttg
tctggaggtgcagatggagtgatcgttatctatgacctggagaactacagtgggaaacca
cagtacacctgcaaggctgtctgcacagtaggcaggtctagccggtatgtccacaagttc
agtgttgagacagttcagtggtatccttatgacacaggcatgtttgtctccagttccttt
gataagaccatgaaggtctgggatactgagacactgaagcctgctgaagtctttgagttt
gagggcaatgtctacagtcaccacctgtcccccatcgccaggaagcacagtctcattgca
gtgggcaccaaaaaccccaaaattcagctctgtgacctgaagtctggttcacggattcat
gttcttcagggtcatagagcagaggtcctgtccgtgcggtggtcgcccagatacgagcac
atcttggccactgccagtgcagacagcaaggtgaaagtatgggatgtccgtcgggcttct
ggtagtctctttacgctggaccagcacaatggagacaagtcgaaagcctcctctgaggca
gtaaacacagcccataatggcagagtgaatggcctgtgcttcaccggtgatggcctctac
ctcctcacaactggaactgatgaccgtatgagactatggaacagtgccactggagagaac
acactggtgaattatgggaaggtctgcaacgaaagtcgtaaaaggctacagttcacggtg
tcacgtggctgcagcccggagtttgtgtttgtgccatgcggtagctctatcgcagtgtat
gccctccacactggagagttggtcactatgctcaggggtcactacaacaatgtcgactgc
tgcgaatttcacccagacttccaggagctgtatagtggaggcaaagactgtaacatcctg
gcgtgggtgcctgtccttcgtgcctcagatgtggaagaggagtcaaactgtacaaataag
ggtgctgccggccagtcctcagtgaaccctgcctttcaggacacatggagcagtgatgaa
gattaa
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