Xiphias gladius (swordfish): 120806164
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Entry
120806164 CDS
T07311
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120806164 (taf1c)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
120806164 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
120806164
NCBI-ProteinID:
XP_040012918
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All DBs
Position
LG20:complement(3513122..3529247)
Genome browser
AA seq
1114 aa
AA seq
DB search
MDYEFPQQLFPSFYNCGPPDSVLKHCAGNWGCYDRVRPLGGSGPPSSWTFTSRHQVRGET
WRHTEPIPVPLLSPKNSYLWPSEPPDPLDFTEHMQNFFMDHCQDAFGCMGEILGENFNFK
QGVRERYRKDSASMWKVKNFLDMLKFKICQQSYSSRSLNAYSVLLSDVVHSVPPELLGAL
LYEELTEQRDRLLFSEGATGGALAFIPFSQSSSGSQHGCLLYPGNQGLDRLNFHRVELQH
HRGSSSILTTSSDPISFQLKGPIRQISSVSLFDNCCVAVRSDHLCGVWRFSERNEPRLLQ
VVNTREVATCISVSPHILGEVLVASESGAANLWTVGKGMQKVREEDSNLYFNAKSSWRWC
EFSAHPRVMLYADRTGVELTDIRASPTCSHTLFRISNSSECRSGERLILSKYLGDVHSFH
HLITTQFSAYIMDERFPSMPMLKWDHMMHSPPMFCHVLLGSASSGSTVGGARTNKVLLGS
QSSQEITLLQYSGGRAEACFSRGPAQALLRPKDSLKHLPVQIPHRLDTATNRLSSPAAGM
TCVQKKGGKEAGGEECICILQLTEAGDIFYQILEPDQPDANTSRPPAAEDEPLPQQAATK
LTQPTLKEVTTSGRKTAEKFSLNSQLIIADTSSDEDIIGPTQGLAVPRFVSETPEKEQQG
VIMYSDSEDSESGGKSQKLKHLGLQVIVNDDPELDHANGLDSGVKDGKFGGDKADDTEEA
RGVEETVGSSNSLSRLGPCEQQTQVKLSKGALITWKHWLQKLIQKSRKKKPHPRSLQHFT
IKTKGFLHLANDEARDSTEEERVQSLRRDLRASMYKRSLLVHSTVSNSLRAPDVVLMPNL
VDTEVWRDQLSRRLTLSWQGEEAWRAWWEDHLGLNREEKVKALKRKRRREKDAKRAAGRC
LELSGSFTSSVSYQSDLDNFSDSTGWSSAASQRMWSDTEGTGPLSQLEGFSEHGTPRATT
PSKVQNDTPVPTPSVTPRSVKDKQGDHQTPRSSNTPSLSQTTAASQRRITRPAEDYLSSL
FAPQDEPSQHNINFLEEGSTIQPPPGSSSSQLRSSQSVPQRILRVDLSQDSSIRWGFSQS
LSLSQSSQGRLGLSQASQASQASQPKKKKSRMGF
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggactacgagttcccacagcagctttttccctcgttttacaactgcggaccgccggac
tccgtcctcaaacactgcgctggaaactggggctgctacgaccgagtccgacctctgggc
ggctctggtcctccctccagctggacctttacatccagacatcaggttagaggggagaca
tggcgtcacactgagcccataccagttcccctcctgtctcctaaaaactcttacctttgg
ccttcagagcctccagatccactggacttcacagaacatatgcagaacttcttcatggat
cactgccaggacgcctttgggtgcatgggtgaaattctgggtgaaaacttcaactttaaa
caaggagtgagagagagatatcggaaggattcagccagcatgtggaaggtgaaaaacttc
cttgatatgctgaagtttaaaatatgtcagcagtcgtattcttccagatcgctgaacgca
tacagtgtcctgctgtcagatgtggttcattctgtccctcctgagctgttgggtgctctg
ctgtacgaggagctgacagagcagagagaccgtctgctcttctctgaaggagccacaggt
ggcgctctggccttcatccccttctcacagagcagcagcggctctcagcatggctgcctc
ctctatcctggaaaccagggactggaccgtctcaacttccacagagtggagctgcagcac
cacagaggaagttcctccattctcaccaccagcagcgacccaatcagcttccagctgaaa
ggtcccatcagacagatcagctctgtctccctgttcgacaactgttgtgttgctgtgcgg
tcggatcacctgtgtggagtttggaggttcagtgaaagaaacgaacctcgtctgctgcag
gtggtcaacaccagagaggtcgcaacgtgcatcagtgtcagtcctcatatactaggtgaa
gttctggtggcaagtgagagtggagcagcgaacctgtggactgttggcaaagggatgcag
aaggtacgggaggaggacagcaacctgtacttcaacgccaagtcatcgtggcgatggtgc
gaattctctgcccacccgagggtgatgctgtacgcagacaggacgggggtggagctcacg
gacatcagggcgagtcctacgtgcagccacactctgtttcgtatcagcaacagctcagag
tgtcggagtggagagagactcatcctgtccaaatatcttggagacgtccactccttccac
cacctcatcaccactcagttctcagcctacattatggacgagcgtttcccctccatgccc
atgctcaagtgggatcacatgatgcactccccgcccatgttttgtcatgtccttcttggc
tccgcctcctcaggctcaacagtgggtggtgctagaaccaataaggtcctgttgggctcc
caaagttctcaggaaatcaccctgctgcagtactcaggaggaagggcagaggcctgtttt
agtcgaggtcctgctcaggctctgctcagacccaaagatagtctgaaacaccttcctgtc
cagattcctcaccggctggacaccgcgaccaacagactgtcctcacctgctgcaggtatg
acttgtgttcagaagaaaggaggaaaagaagcaggtggagaggagtgtatctgcatccta
cagctgacagaggcaggagatattttctaccagatccttgagccggaccagccagacgcc
aacacttctcgacctccagcagcagaggatgaaccactgccacaacaagcagccacaaaa
ctgacacaaccaacactgaaagaagtcacaacatcggggagaaaaacagcagaaaagttt
tcactaaattctcagctgattatagcagatacgtcgagcgatgaggacataattgggcca
actcagggtctggctgtgccaaggtttgtttctgaaacaccagagaaggaacagcaaggg
gtgatcatgtactctgactctgaggattcagagtcaggagggaaaagtcaaaagctgaag
catttggggctgcaggtcattgtcaacgatgatccagagctggatcacgctaatggattg
gactcaggagtgaaagatggaaagtttggtggagataaagctgatgatactgaggaagcc
cgcggtgtggaggaaacagtcggcagctccaatagcttgagtcgccttggtccctgtgag
cagcagactcaagtaaagctgagcaaaggtgctctcatcacctggaaacattggctccag
aaactgatacaaaaaagtcgtaaaaagaagccccacccacgctctctacagcacttcaca
atcaaaactaaaggctttctccacctggctaatgacgaagcaagagattcgacggaagag
gagcgtgtgcagagcctgaggcgagatctgagagcgagcatgtacaaacgctcgctgctg
gttcacagcactgtctccaactccctcagggctccagatgtagtcttgatgccaaacctg
gtggacacagaggtctggagagatcagctcagccgtcgcctcaccctctcctggcagggg
gaggaagcgtggcgggcgtggtgggaggaccacctggggctgaacagggaggagaaggtg
aaggctctgaagaggaagaggaggagggagaaggacgcaaagagagctgccggccgatgc
ctggagctgtccggcagcttcacctcatctgtcagctaccagtcggatctggacaatttc
tctgattcaacgggctggtcctcggcagcgagccagaggatgtggtctgacaccgaaggg
acggggccgttatctcagttggagggcttttcagagcatgggacaccaagagccacaaca
ccctccaaagtccaaaatgacaccccagttcccacgccaagcgtcacacctcgaagtgtt
aaagataaacaaggtgaccaccagactcccaggagctccaacaccccttctctgtcccag
accacagcagccagtcagaggaggatcacacgtccagcagaggactacctcagctctctg
tttgcaccacaggatgagccctcgcaacataacatcaacttcctggaagagggaagcacc
atacaacctccacctgggtcctcctcctctcagctccgcagctcacagtctgtccctcag
aggatcctcagggtggatctgtcccaggactcctccatccggtggggtttctcccagtct
ctgtccctctcccagagttcacagggtcgactggggctgtcgcaagcatcgcaagcatcg
caggcatctcaacccaagaagaagaagtctagaatgggattttga
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